{"schema":"https://ver.cy/schemas/card/1.0.0","id":"vr.tr.bacteria","code":"thing-q10876","url":"https://ver.cy/models/thing/q10876/","name":"bacteria","alternateNames":["soil bacterium","Aerobic anoxygenic photoheterotroph bacteria","pathogenic bacteria","Carboxydotrophs","anaerobic bacteria","aerobic bacteria","Plant-growth promoting rhizobacteria","bacterioplankton","phototrophic bacteria","psychrophile bacteria","marine bacteria","entomopathogenic bacterium"],"kind":"thing","status":"published","version":"0.2.0-wave.1","language":"en","classifiers":{"family":"Thing Registry","category":"Physical world and living systems","entryKind":"thing","plane":"PHY","domain":["PHY.LIV"],"industry":[],"navPath":"","tags":[],"facets":{}},"whatItIs":"Single-celled prokaryotic microorganisms without a nucleus, found in soil, water, air and on and in other organisms; most are harmless or beneficial, some cause disease, and many are used in food, industry and research.","purpose":"Let an agent handle bacteria by taxon, habitat, role, health relevance and uses, without diagnosis or personal medical advice.","scope":{"in":[],"out":[],"boundaries":[]},"distinguishingFeatures":["Prokaryotic cells","Everywhere on Earth","Mostly harmless or useful","Some are pathogens"],"structure":{"bundles":[{"id":"classification","name":"Classification","description":"Which bacterium.","layers":[{"id":"taxon","name":"Taxon","description":"Name.","findings":[{"id":"taxon-finding","name":"Taxon","description":"Taxon.","questions":[{"text":"Which bacterium is meant, and what is its current valid name?","kind":"provenance"},{"text":"Is it Gram-positive or Gram-negative?","kind":"definition"}]}]},{"id":"habitat","name":"Habitat","description":"Where found.","findings":[{"id":"habitat-finding","name":"Habitat","description":"Habitat.","questions":[{"text":"Where does it live, according to reliable sources?","kind":"provenance"},{"text":"Is it part of the normal 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bacterial food poisoning be prevented, according to food safety guidance?","kind":"provenance"},{"text":"Which temperatures are safe?","kind":"measurement"}]}]},{"id":"handwashing","name":"Handwashing","description":"Everyday hygiene.","findings":[{"id":"handwashing-finding","name":"Handwashing","description":"Hand hygiene.","questions":[{"text":"What hand hygiene do health authorities recommend?","kind":"provenance"},{"text":"When is it most important?","kind":"definition"}]}]}]},{"id":"uses","name":"Uses","description":"Beneficial bacteria.","layers":[{"id":"food-uses","name":"Food uses","description":"Fermentation.","findings":[{"id":"food-uses-finding","name":"Food uses","description":"Fermentation.","questions":[{"text":"Which bacteria are used to make yoghurt, cheese or sauerkraut?","kind":"provenance"},{"text":"How does fermentation work?","kind":"definition"}]}]},{"id":"biotech","name":"Biotechnology","description":"Industry.","findings":[{"id":"biotech-finding","name":"Biotechnology","description":"Biotechnology.","questions":[{"text":"How are bacteria used in biotechnology or wastewater treatment?","kind":"definition"},{"text":"What regulation applies?","kind":"provenance"}]}]}]}]},"agentConduct":{"may":["Identify and report bacteria from laboratory data, citing the method used.","Explain the roles of bacteria in health, soil and food, citing sources."],"mustNot":["Help anyone obtain, grow or spread bacteria in order to harm people, animals or crops.","Advise antibiotic treatment or dosing for a person or animal.","Present a laboratory identification as a clinical diagnosis.","Handle or dispose of bacterial cultures outside the containment rules for the organism."],"requiresHuman":["Any decision on treating a bacterial infection.","Reporting a notifiable infection to public health authorities."]},"ethics":{"considerations":["Most bacteria are harmless or needed for life, but a few cause deadly disease.","Overuse of antibiotics drives resistance that threatens everyone's future care."],"affectedParties":["Patients and their contacts","Laboratory workers","The wider public"]},"owners":{"steward":"Nobody: wild organisms; laboratories and biosafety regulators answer for cultures held.","roles":[],"masterSystems":["Microbial strain collections and taxonomy databases"]},"relations":[{"target":"Q39833","type":"parent","note":"registry parent class"},{"target":"microorganism","type":"related","note":"category"},{"target":"antibiotic","type":"related","note":"therapy"},{"target":"microbiome","type":"related","note":"community"},{"target":"virus and archaea","type":"related","note":"other microbes"}],"interaction":{"identity":{"applicability":"required","items":["Vercy registry: vr.tr.bacteria","Wikidata: Q10876 (https://www.wikidata.org/wiki/Q10876)","NCBI Taxonomy ID: numeric taxonomy","LPSN name: validly published names nomenclature"]},"properties":{"applicability":"required","items":["typical size: about 0.5-5 micrometres"]},"recognition":{"applicability":"required","items":["Shapes such as cocci, bacilli, spirilla","Gram-positive or Gram-negative staining","Archaea are a separate domain","Microscopic rods, spheres or spirals, seen under the microscope or as colonies on plates."]},"capabilities":{"applicability":"required","items":["classify bacteria by taxonomy and shape","explain beneficial and harmful roles","find public health and hygiene guidance","understand antibiotic resistance"]},"hazards":{"applicability":"required","items":["Agents diagnosing infections","Antibiotic misuse and resistance","Laboratory biosafety detail beyond general information"]},"interfaces":{"applicability":"required","items":["International Code of Nomenclature of Prokaryotes","Biosafety rules for laboratories","Food hygiene law"]},"context":{"applicability":"required","items":["A subject of biology, health, food, environment and biotechnology.","soil and environmental bacteria","gut and skin microbiota","pathogenic bacteria","industrial and food bacteria","photosynthetic bacteria"]}},"sources":[{"title":"Wikidata item Q10876: Bacteria","url":"https://www.wikidata.org/wiki/Q10876","note":"identity and sense of the item"},{"title":"Wikipedia: Bacteria","url":"https://en.wikipedia.org/wiki/Bacteria","note":"general description of the item"}],"openQuestions":["Should bacterial groups be separate entries?","How should taxonomy databases be linked?","How should resistance data be sourced?"],"resources":{"spec":"/models/things/publications/thing-q10876/spec.json"},"provenance":{"origin":"thing registry research (pass 2)","builtFrom":["models/things/publications/thing-q10876/spec.json"],"providers":["Claude"],"researchStatus":"unreviewed","generatedAt":"2026-09-11T10:31:22Z","builder":"tools/build_cards.py@1.0.0"},"completeness":{"sections":{"classifiers":"filled","whatItIs":"filled","purpose":"filled","distinguishingFeatures":"filled","structure":"filled","agentConduct":"filled","ethics":"filled","owners":"filled","relations":"filled","interaction.identity":"filled","interaction.properties":"filled","interaction.recognition":"filled","interaction.capabilities":"filled","interaction.hazards":"filled","interaction.interfaces":"filled","interaction.context":"filled","sources":"filled"},"notes":{"_gate":"Published through the thing publication gate 1.0 on 2026-10-06T19:51:53+00:00: completeness 1.00; sense: Wikidata description; 2 live sources; review by codex: pass"},"score":1.0}}