FGF23
Enable an agent to identify the human FGF23 gene, distinguish its variants and transcripts from the encoded hormone, and assess gene-related evidence in a specified context.
Bundle → Layer → Finding → Questions Filled
7 bundles · 13 layers · 18 findings · 30 questions
FGF23 identity Establish what biological entity the FGF23 name denotes in each record.
Protein boundary
Separate the hormone from its encoding locus and neighbouring FGF family members.
Entity resolution
Record the evidence identifying the entity as FGF23 protein rather than DNA, RNA or another FGF.
- Does this record concern FGF23 protein, its encoding gene or its transcript? boundary
- Which accession or sequence evidence establishes FGF23 protein identity? definition
Ortholog and construct
Resolve species, sequence reference and modifications introduced during production.
Sequence provenance
Attach species and construct boundaries to molecular and experimental claims.
- Which species and versioned protein sequence define the residue numbering? provenance
- Which substitutions, truncations or tags distinguish this material from endogenous FGF23? definition
FGF23 processing Represent conversion between precursor, intact hormone and cleavage fragments.
Maturation and cleavage
Track signal-peptide removal separately from cleavage of the hormone.
Form assignment
Record experimentally supported residue boundaries and distinguish secretory maturation from subsequent fragmentation.
- Does the material retain its signal peptide, represent mature intact FGF23 or contain cleavage fragments? definition
- Which sequence, mass-spectrometric or immunoblot evidence establishes the assigned form? measurement
Processing control
Capture modifications and sequence changes relevant to proteolytic susceptibility.
Cleavage susceptibility
Distinguish measured modification states and cleavage behavior from predictions based on enzyme expression. [Primary processing study](https://pubmed.ncbi.nlm.nih.gov/26746780/)
- Which glycosylation or phosphorylation sites were measured on this FGF23 preparation? measurement
- What evidence connects its sequence or modifications to cleavage under the stated conditions? provenance
FGF23 production and disposition Connect FGF23 synthesis and secretion to circulating abundance and removal.
Source and secretion
Identify the producing cells and evidence that their product enters the measured compartment.
Production evidence
Keep transcript expression, intracellular protein and released FGF23 as distinct observations.
- Which cells or tissues are evidenced to produce FGF23 in this organism and condition? provenance
- Was production inferred from RNA, measured as intracellular protein or demonstrated by secretion? measurement
Circulation and removal
Assess compartment, timing and clearance when interpreting abundance.
Concentration drivers
Separate evidence for synthesis, cleavage and removal; human renal sampling provides one approach to studying clearance. [Primary renal clearance study](https://pmc.ncbi.nlm.nih.gov/articles/PMC9177785/)
- Which compartment and sampling time does the FGF23 concentration describe? measurement
- What evidence distinguishes increased secretion from changed cleavage or reduced clearance? boundary
FGF23 signaling and response Connect a specified FGF23 form to receptor engagement and measured physiological effects.
Receptor competence
Describe the receptor and co-receptor conditions supporting the observed response.
Signaling attribution
Require a defined responding system and controls before attributing activity to FGF23.
- Which FGFR and alpha-Klotho conditions were established in the responding cells? measurement
- Which inhibition, depletion or rescue controls attribute the response specifically to FGF23? provenance
Mineral metabolism response
Relate FGF23 exposure to phosphate handling and vitamin D endpoints.
Functional endpoints
Record the measured endpoint and timing instead of treating circulating FGF23 as a direct measurement of physiological effect.
- Which renal phosphate-handling or vitamin D endpoint changed after the defined FGF23 exposure? measurement
- What separates an FGF23-mediated effect from concurrent changes in kidney function, PTH or mineral intake? boundary
FGF23 measurement Make each FGF23 result interpretable in terms of molecular targets, calibration and specimen quality.
Assay target
Specify what the method actually detects.
Detected molecular population
C-terminal immunoreactivity must not be labeled fragment-only concentration; intact assays and C-terminal assays recognize different molecular populations. [Primary assay study](https://link.springer.com/article/10.1007/s00198-012-2029-3)
- Does the assay detect intact FGF23, intact plus C-terminal fragments or another defined target? definition
- Which epitope and cross-reactivity evidence supports that analyte definition for this species? provenance
Result comparability
Establish whether measurements can be compared or combined.
Calibration and specimen
Keep units, calibrator, assay platform and specimen history attached to the result; do not subtract unlike assay values to estimate fragments.
- What units, calibrator, quantification limits and specimen conditions apply to this result? measurement
- What validation permits comparison, conversion or combination with the other FGF23 measurements? action
FGF23 use and interpretation Determine what an observation or preparation supports an agent doing next.
Biological interpretation
Interpret results against contemporaneous physiology and the intended question.
Contextual meaning
An assay reference interval and physiological appropriateness are separate assessments; neither alone establishes a disease or treatment indication.
- Which simultaneous phosphate, kidney function, vitamin D and PTH observations are needed for this interpretation? measurement
- Does the evidence support association, a mechanistic explanation or only a request for further investigation? boundary
Experimental fitness
Match FGF23 material to a defined experimental use.
Preparation acceptance
Assess identity, intactness and activity in relation to the proposed experiment rather than relying on the reagent label.
- Which identity, cleavage, purity and potency measurements qualify this lot for the intended experiment? measurement
- Which controls distinguish FGF23 activity from tag effects, contaminants or accompanying fragments? action
Evidence and external alignment What the world already says about this thing, gathered so the model can be checked against it.
Reported evidence
Findings from the breadth pass, kept separate from the structural claims.
Check these first
Recalled without web access and unsourced; every item is a lead to verify.
- Which of these check these first hold for the sense of FGF23 this model covers, and on what evidence? provenance
Identifiers and schemes
Recalled without web access and unsourced; every item is a lead to verify.
- Which of these identifiers and schemes hold for the sense of FGF23 this model covers, and on what evidence? provenance
Real-world use
Recalled without web access and unsourced; every item is a lead to verify.
- Which of these real-world use hold for the sense of FGF23 this model covers, and on what evidence? provenance
Typical measurements
Recalled without web access and unsourced; every item is a lead to verify.
- Which of these typical measurements hold for the sense of FGF23 this model covers, and on what evidence? provenance
Failure modes and hazards
Recalled without web access and unsourced; every item is a lead to verify.
- Which of these failure modes and hazards hold for the sense of FGF23 this model covers, and on what evidence? provenance
Neighbouring kinds and how to tell them apart
Recalled without web access and unsourced; every item is a lead to verify.
- Which of these neighbouring kinds and how to tell them apart hold for the sense of FGF23 this model covers, and on what evidence? provenance
Classifiers Filled
- Family
- Thing Registry
- Category
- Physical world and living systems
- Entry kind
- thing
- Plane
- PHY
- Domain
- PHY.OBJ
What it is Filled
FGF23 is a human protein-coding gene that encodes fibroblast growth factor 23, a secreted hormone produced predominantly by bone osteocytes that regulates phosphate and vitamin D metabolism.
In scope
- Human FGF23 gene identity and reference genomic sequence are included.
- Genomic coordinates qualified by reference assembly are included.
- Gene variants and their evidence-supported annotations are included.
- Transcript models, transcriptional regulation and RNA expression are included.
- Relationships between the gene, its transcripts and its encoded hormone are included.
Out of scope
- The FGF23 protein hormone, its processing and cleavage fragments as independent molecular entities are excluded.
- FGF receptors, alpha-Klotho and processing enzymes as independently modeled entities are excluded.
- Whole-organism phosphate homeostasis and bone remodeling are excluded.
- Diseases associated with altered FGF23 as complete clinical entities are excluded.
- Assay kits, therapeutic antibodies and treatment protocols as independent products or interventions are excluded.
Why it exists Filled
Enable an agent to identify the human FGF23 gene, distinguish its variants and transcripts from the encoded hormone, and assess gene-related evidence in a specified context.
Distinguishing features Filled
- Human FGF23 gene identity is represented by NCBI Gene 8074 and must be distinguished from the encoded hormone.
- Genomic coordinates and variant descriptions require an explicit reference assembly or sequence accession.
- FGF23 is distinct from the human FGF19 and FGF21 genes.
- Transcript abundance describes RNA expression and does not directly establish circulating hormone abundance or activity.
- Intact and C-terminal hormone assays measure protein-related signals rather than gene identity or genotype.
What robots and AI may and may not do Filled
Must not
- Diagnose a person's phosphate or kidney disorder from an FGF23 result.
- Share a person's test results without consent.
- Recommend phosphate or vitamin D dosing to a person.
- Present research findings as established treatment.
Only with a human decision
- Any clinical decision using FGF23 results.
- Research on patient samples without documented consent.
May
- Describe the human FGF23 gene and its encoded hormone's role in phosphate and vitamin D regulation, citing sources.
- Report gene variant and RNA expression evidence with its reference context and limits.
Moral aspects Filled
- Patients with kidney disease and rare bone disorders depend on accurate information.
- Lab results are private health data.
Who is affected
- Patients with kidney or bone disorders
- Clinicians
- Researchers
Owners Filled
Steward
The person whose genome carries it has interests in associated samples and data; laboratories and biobanks steward the records.
Master systems
- Gene and variant databases hold relevant reference records.
Links to other meta-models Filled
parent
- Q20747295 - registry parent class
What else AI and robots need to interact with it Filled
Identity and identifiers required Filled
- Vercy registry: vr.tr.fgf23
- Wikidata: Q14897899 (https://www.wikidata.org/wiki/Q14897899)
Direct properties required Filled
- Species and protein reference: Taxon, protein accession and sequence version
- Molecular form: Precursor; mature intact hormone; N-terminal fragment; C-terminal fragment; engineered construct; unresolved mixture
- Sequence alteration: Reference sequence; substitution; truncation; fusion or tag; unknown, with residue numbering reference
- Post-translational processing: Site-specific glycosylation, phosphorylation and cleavage status; measured or unresolved
- FGF23 assay result: Assay-reported units, commonly pg/mL or RU/mL, with method and analyte definition
- Production source: Organism, tissue, cell population or recombinant expression system
- Signaling context: Target cell, FGFR identity, alpha-Klotho status and experimental conditions
- Functional potency: Assay-defined response, relative potency or EC50 with concentration units and endpoint
- Specimen condition: Matrix, collection conditions, processing delay, storage temperature and freeze-thaw history
Recognition required Filled
- The gene is identified through human genomic sequence records and reference identifiers.
- Blood hormone immunoassays measure the encoded product rather than identify the gene.
Capabilities and actions required Filled
- Resolve whether an FGF23 record describes a protein, fragment, construct or gene-related observation.
- Select an assay whose detected molecular forms match the question being asked.
- Compare serial FGF23 results after checking method, units, specimen conditions and physiological context.
- Assess a recombinant FGF23 preparation for a specified binding or signaling experiment.
- Link FGF23 observations to phosphate and vitamin D measurements without inferring diagnosis from FGF23 alone.
- Identify missing evidence that prevents claims about production, cleavage, clearance or biological activity.
Hazards and failure modes required Filled
- Confusing genomic variants, RNA expression and hormone measurements can produce misleading comparisons.
- Misinterpretation of results by non-specialists can cause harm.
- Reference sequence or assembly mismatches can produce incorrect variant annotations.
Standards and interfaces required Filled
- Human gene nomenclature, HUGO Gene Nomenclature Committee (HGNC), which approves the gene symbol.
Context of use required Filled
- The human FGF23 gene is studied in bone biology and research on phosphate and vitamin D regulation.
- Its sequence and expression help relate genetic variation and hormone production to mineral metabolism, while circulating protein forms require separate characterization.
Sources Filled
- Wikidata item Q14897899: FGF23 - identity and sense of the item
- Wikipedia: Fibroblast growth factor 23 - general description of the item
Open questions
- Does vr.tr.fgf23 identify the protein hormone, the human gene or a cross-species concept in its originating registry record?
- Which species, sequence variants and recombinant constructs require explicit subordinate descriptions within this single model?
- Which assay-specific reference intervals, specimen stability limits and cross-platform comparisons are validated for the intended population and use?
- Under which endogenous conditions do FGF23 fragments have demonstrated biological effects, and how do those differ from experimental peptide administration?
- Which proposed extra-renal or alpha-Klotho-independent effects have sufficiently strong causal evidence to include as established FGF23 activities?
Machine files
Provenance
thing registry research (pass 2) · unreviewed
Built from: models/things/publications/thing-q14897899/spec.json