{ "model": { "rank": 6805, "code": "thing-q185098", "model_id": "vr.tr.electrophoresis", "name": "electrophoresis", "purpose": "Let an agent explain electrophoresis by method, equipment, interpretation, safety and applications, without interpreting individual medical results.", "family": "Thing Registry", "category": "Activities and processes", "status": "research-draft", "kind": "thing", "plane": "ACT", "domain": "ACT.PRC", "industry": "", "version": "", "url": "/models/thing/q185098/", "tier": 2, "score": 58, "payload": { "layer": "wikidata", "aliases": [ "microchip electrophoresis", "Gel electrophoresis of nucleic acids", "serum protein electrophoresis", "Free-flow electrophoresis", "zone electrophoresis", "lipoprotein electrophoresis", "isotachophoresis", "crossover electrophoresis", "Affinity electrophoresis", "gel electrophoresis", "paper electrophoresis", "cellulose acetate electrophoresis", "capillary electrophoresis", "immunoelectrophoresis", "native electrophoresis", "isoelectric focusing", "dielectrophoresis", "gel electrophoresis of proteins", "Zymography", "Discontinuous Electrophoresis", "gradient electrophoresis", "Colorless Native Polyacrylamide Gel Electrophoresis", "polyacrylamide gel electrophoresis", "two-dimensional gel electrophoresis", "Difference gel electrophoresis", "QPNC-PAGE", "starch gel electrophoresis", "two-dimensional difference gel electrophoresis", "pulsed field gel electrophoresis", "agarose gel electrophoresis", "capillary isoelectric focusing", "counterimmunoelectrophoresis", "two-dimensional immunoelectrophoresis", "native polyacrylamide gel electrophoresis", "BAC-PAGE", "CTAB-PAGE", "disc electrophoresis", "denaturing gradient gel electrophoresis", "SDD-AGE" ], "aliasCount": 39, "merged": 39, "knownIn": 58, "facets": null, "markers": [], "lexicalClass": "", "senseRank": null, "alsoRegisteredAs": "vr.tr.electrophoresis", "source": { "dataset": "wikidata", "item": "Q185098", "url": "https://www.wikidata.org/wiki/Q185098", "license": "CC0 1.0" } }, "research": { "vercy": "1.0-draft", "publication": { "status": "research-draft", "adjudicationStatus": "unreviewed", "publishableCanonical": false, "generatedAt": "2026-09-11T12:19:31Z", "providers": [ "Claude" ], "breadth": "written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify", "pass": 2, "wave": 1, "engine": "claude" }, "metaModel": { "id": "THING-Q185098", "registryId": "vr.tr.electrophoresis", "name": "electrophoresis", "version": "0.2.0-wave.1", "entryKind": "thing", "family": "Thing Registry", "domain": [ "ACT.PRC" ], "status": "research-draft" }, "canonicalUrl": "https://ver.cy/models/thing/q185098/", "model": { "registry_id": "vr.tr.electrophoresis", "name": "electrophoresis", "purpose": "Let an agent explain electrophoresis by method, equipment, interpretation, safety and applications, without interpreting individual medical results.", "definition": "A laboratory technique that separates charged molecules such as DNA, RNA and proteins by their movement through a gel, capillary or fluid under an electric field, according to size, charge and shape; used in research, forensics and clinical tests such as serum protein electrophoresis.", "what_it_is_for": "Separating and analysing biomolecules.", "affordances": [ "choose a type of electrophoresis", "explain how gels are run and read", "follow lab safety for stains and voltage", "describe clinical and forensic uses in general terms" ], "distinguishing_features": [ "Uses an electric field", "Separates by size and charge", "Needs markers for comparison", "Widely used in molecular biology" ], "appearance": "Gel slabs in buffer tanks with bands, or capillary instruments producing electropherograms.", "visual_identification": [ "Bands on agarose or polyacrylamide gels", "Ladders of size markers", "Chromatography separates by different principles" ], "physical_properties": [], "families_and_kinds": [ "agarose gel electrophoresis", "SDS-PAGE", "capillary electrophoresis", "two-dimensional electrophoresis", "clinical protein electrophoresis" ], "related_models": [ { "relation": "is a kind of", "target": "separation process", "why": "category" }, { "relation": "separates", "target": "nucleic acids and proteins", "why": "analytes" }, { "relation": "is used in", "target": "DNA profiling", "why": "application" }, { "relation": "is contrasted with", "target": "chromatography", "why": "alternative" } ], "identifiers": [], "standards_and_regulation": [ "Laboratory electrical safety rules", "Chemical safety for stains and acrylamide", "Clinical laboratory accreditation" ], "failure_modes_and_hazards": [ "Electric shock from power supplies", "Toxic stains and unpolymerised acrylamide", "Misreading bands without controls" ], "in_scope": [], "out_of_scope": [], "characteristics": [] }, "sources": [], "structure": { "bundles": [ { "id": "method", "name": "Method", "description": "Technique.", "rationale": "Choice depends on sample.", "layers": [ { "id": "type", "name": "Type", "description": "Which technique.", "findings": [ { "id": "type-finding", "name": "Type", "description": "Technique choice.", "questions": [ { "text": "Which electrophoresis technique suits this sample?", "kind": "definition" }, { "text": "What gel percentage or buffer is appropriate?", "kind": "measurement" } ] } ] }, { "id": "run", "name": "Run", "description": "Running a gel.", "findings": [ { "id": "run-finding", "name": "Run", "description": "Running.", "questions": [ { "text": "What voltage and time are typical for this gel?", "kind": "measurement" }, { "text": "Which protocol source is used?", "kind": "provenance" } ] } ] } ] }, { "id": "reading", "name": "Reading", "description": "Interpretation.", "rationale": "Controls enable reading.", "layers": [ { "id": "bands", "name": "Bands", "description": "Sizes.", "findings": [ { "id": "bands-finding", "name": "Bands", "description": "Band sizes.", "questions": [ { "text": "How are band sizes estimated against a ladder?", "kind": "measurement" }, { "text": "What could smears or extra bands mean?", "kind": "definition" } ] } ] }, { "id": "clinical", "name": "Clinical", "description": "Medical tests.", "findings": [ { "id": "clinical-finding", "name": "Clinical", "description": "Clinical tests.", "questions": [ { "text": "What does serum protein electrophoresis test for, in general terms?", "kind": "provenance" }, { "text": "Is the user asking about their own result?", "kind": "boundary" } ] } ] } ] }, { "id": "safety", "name": "Safety", "description": "Hazards.", "rationale": "Voltage and chemicals.", "layers": [ { "id": "electrical", "name": "Electrical", "description": "Shock.", "findings": [ { "id": "electrical-finding", "name": "Electrical", "description": "Electrical safety.", "questions": [ { "text": "Is the power supply off before lids are opened?", "kind": "boundary" }, { "text": "What are lab rules for high-voltage equipment?", "kind": "provenance" } ] } ] }, { "id": "chemical", "name": "Chemical", "description": "Stains.", "findings": [ { "id": "chemical-finding", "name": "Chemical", "description": "Chemical safety.", "questions": [ { "text": "Which stains or reagents are hazardous, and what protection is needed?", "kind": "provenance" }, { "text": "How is waste disposed of?", "kind": "provenance" } ] } ] } ] }, { "id": "applications", "name": "Applications", "description": "Uses.", "rationale": "Uses are broad.", "layers": [ { "id": "research", "name": "Research", "description": "Molecular biology.", "findings": [ { "id": "research-finding", "name": "Research", "description": "Research uses.", "questions": [ { "text": "How is electrophoresis used in cloning and PCR checks?", "kind": "definition" }, { "text": "Which alternatives exist?", "kind": "definition" } ] } ] }, { "id": "forensic", "name": "Forensic", "description": "DNA profiling.", "findings": [ { "id": "forensic-finding", "name": "Forensic", "description": "Forensic uses.", "questions": [ { "text": "How is capillary electrophoresis used in DNA profiling, in general terms?", "kind": "definition" }, { "text": "Which standards govern forensic labs?", "kind": "provenance" } ] } ] } ] } ] }, "openQuestions": [ "Should techniques be separate entries?", "How should protocols be linked?", "How should clinical tests be linked?" ], "statistics": { "bundles": 4, "layers": 8, "findings": 8, "questions": 16 } }, "draft": { "generator": "vr.draft.v3", "status": "draft-generated", "researched": false, "archetype": "abstract concept", "method": "Written from the archetype playbook - what this kind of thing needs beyond identity and provenance - and from the structure that recurred across 6,333 models already researched by two engines. Applied to this entry by rule. No source was read for this thing and no claim here is researched. This entry carries no facets of its own, so they were inferred from its domain - a guess about a whole domain applied to one thing.", "facetsInferred": true, "nextPass": "A researcher replaces this draft with a sourced specification. Treat every sentence below as a proposal to argue with.", "purpose": "Give an agent a durable, checkable way to recognise a electrophoresis, record what state it is in, and decide what may be done with it.", "whatItIs": "Let an agent explain electrophoresis by method, equipment, interpretation, safety and applications, without interpreting individual medical results.", "characteristics": { "substance": "activity", "origin": "conceptual", "agency": "inert" }, "whatYouCanDoWithIt": [ "observed and measured" ], "distinguishingFeatures": [ "Names folded into this entry, which a task may need to split apart again: microchip electrophoresis, Gel electrophoresis of nucleic acids, serum protein electrophoresis, Free-flow electrophoresis, zone electrophoresis, lipoprotein electrophoresis, isotachophoresis, crossover electrophoresis, Affinity electrophoresis, gel electrophoresis, paper electrophoresis, cellulose acetate electrophoresis.", "39 finer distinctions are held as aliases rather than separate entries, because telling them apart needs a task that asks for it.", "Described in 58 Wikipedia languages, which is a measure of how widely the thing is known, not of how important it is." ], "openQuestionsForResearch": [ "Which of the bundles below does a real task actually need, and which are ceremony?", "What does this thing have that the facets do not capture at all?", "Which neighbouring kind is most often confused with a electrophoresis, and on what evidence are they told apart?" ], "whatItIsMadeOf": "something that happens over time", "physicalCharacter": [ "Does nothing on its own; everything it does, something else did to it.", "These come from the domain this entry sits in rather than from the entry itself, so treat them as a first guess about the whole domain applied to one thing." ], "whatCanBeDoneWithIt": [ "observe it, measure it, record its state" ], "howItIsRecognised": [ "Nothing to see. What is recognised is an instance of it, and which instances count is exactly what is argued about." ], "relatedModels": [ { "relation": "covers", "note": "Finer kinds folded into this entry because telling them apart needs a task that asks for it. Each is a model waiting to be split out when one does.", "targets": [ "microchip electrophoresis", "Gel electrophoresis of nucleic acids", "serum protein electrophoresis", "Free-flow electrophoresis", "zone electrophoresis", "lipoprotein electrophoresis", "isotachophoresis", "crossover electrophoresis", "Affinity electrophoresis", "gel electrophoresis", "paper electrophoresis", "cellulose acetate electrophoresis" ] } ], "standing": "Described in 58 Wikipedia languages, which measures how widely it is written about rather than how important or how common it is. 39 finer distinctions are held inside this entry as names rather than as separate models.", "structure": { "bundles": [ { "id": "identity-and-classification", "name": "Identity, naming and classification", "description": "How an agent tells one electrophoresis from another, and a electrophoresis from things that resemble it.", "rationale": "Recognition comes before every other claim. Without stable identity nothing else in the model can be trusted to be about the same thing twice.", "layers": [ { "id": "naming-and-identifiers", "name": "Names and identifiers", "description": "The names this thing goes by and the identifiers that survive translation and time.", "findings": [ { "id": "preferred-name-and-aliases", "name": "Preferred name, aliases and local names", "description": "Which name to use, which names mean the same thing, and which merely sound similar.", "questions": [ { "id": "preferred-name-and-aliases-q01", "text": "What identifies and describes the name of a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "preferred-name-and-aliases-q02", "text": "Who or what asserted this about the name of a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "preferred-name-and-aliases-q03", "text": "What may an agent decide or do once the name of a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] }, { "id": "stable-identifiers", "name": "Stable identifiers and external keys", "description": "Identifiers that keep pointing at this kind of thing across systems and languages.", "questions": [ { "id": "stable-identifiers-q01", "text": "What identifies and describes an identifier for a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "stable-identifiers-q02", "text": "Who or what asserted this about an identifier for a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "stable-identifiers-q03", "text": "What may an agent decide or do once an identifier for a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "classification-and-granularity", "name": "Classification and granularity", "description": "Where a electrophoresis sits among kinds, and how finely a task needs to cut it.", "findings": [ { "id": "kind-and-parents", "name": "Kind, parents and neighbouring kinds", "description": "The classes this thing belongs to and the ones it is next to.", "questions": [ { "id": "kind-and-parents-q01", "text": "What identifies and describes the kind of a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "kind-and-parents-q02", "text": "Who or what asserted this about the kind of a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "kind-and-parents-q03", "text": "What may an agent decide or do once the kind of a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] }, { "id": "distinguishing-features", "name": "Distinguishing features", "description": "What separates a electrophoresis from the things most often confused with it.", "questions": [ { "id": "distinguishing-features-q01", "text": "What identifies and describes what distinguishes a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "distinguishing-features-q02", "text": "Who or what asserted this about what distinguishes a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "distinguishing-features-q03", "text": "What may an agent decide or do once what distinguishes a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] }, { "id": "state-and-lifecycle", "name": "State and lifecycle", "description": "The states a electrophoresis passes through and the events that move it between them.", "rationale": "Most decisions about a thing depend on what state it is in now, which is a claim with a time on it, not a property.", "layers": [ { "id": "lifecycle-stages", "name": "Lifecycle stages", "description": "From coming into existence to ceasing to be one of these.", "findings": [ { "id": "stages-and-transitions", "name": "Stages and transitions", "description": "The stages worth naming and what moves a electrophoresis between them.", "questions": [ { "id": "stages-and-transitions-q01", "text": "What identifies and describes the lifecycle of a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "stages-and-transitions-q02", "text": "Who or what asserted this about the lifecycle of a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "stages-and-transitions-q03", "text": "What may an agent decide or do once the lifecycle of a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "observations-and-status", "name": "Observations and current status", "description": "What is observed about a electrophoresis, how often and by whom.", "findings": [ { "id": "observation-record", "name": "Observation record", "description": "How an observation of a electrophoresis is recorded so that it can be superseded rather than overwritten.", "questions": [ { "id": "observation-record-q01", "text": "What identifies and describes an observation of a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "observation-record-q02", "text": "Who or what asserted this about an observation of a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "observation-record-q03", "text": "What may an agent decide or do once an observation of a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] }, { "id": "process-and-outcome", "name": "Process, inputs and outcome", "description": "How a electrophoresis proceeds, what it needs and what it leaves behind.", "rationale": "An activity is known by its steps and its results, and both have to be recordable while it is still running.", "layers": [ { "id": "steps-and-sequence", "name": "Steps and sequence", "description": "The steps of a electrophoresis, their order and what may run in parallel.", "findings": [ { "id": "steps-and-preconditions", "name": "Steps, preconditions and completion", "description": "What has to be true before each step of a electrophoresis and what marks it done.", "questions": [ { "id": "steps-and-preconditions-q01", "text": "What identifies and describes a step of a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "steps-and-preconditions-q02", "text": "Who or what asserted this about a step of a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "steps-and-preconditions-q03", "text": "What may an agent decide or do once a step of a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "inputs-and-results", "name": "Inputs, resources and results", "description": "What a electrophoresis consumes and what it produces.", "findings": [ { "id": "inputs-and-outputs", "name": "Inputs, outputs and side effects", "description": "The resources a electrophoresis takes and the results it leaves, wanted or not.", "questions": [ { "id": "inputs-and-outputs-q01", "text": "What identifies and describes the inputs and results of a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "inputs-and-outputs-q02", "text": "Who or what asserted this about the inputs and results of a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "inputs-and-outputs-q03", "text": "What may an agent decide or do once the inputs and results of a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] }, { "id": "definitions-in-contest", "name": "Definitions and who holds them", "description": "What electrophoresis is taken to mean, and by whom.", "rationale": "When a field disagrees about a concept, the disagreement is the content. A model that picks one definition silently destroys the information.", "layers": [ { "id": "competing-definitions", "name": "Competing definitions", "description": "The main readings and the traditions behind them.", "findings": [ { "id": "definition-map", "name": "Definitions and their holders", "description": "Each definition with the school or body that holds it.", "questions": [ { "id": "definition-map-q01", "text": "Which definitions of electrophoresis are in use, and which tradition or body holds each?", "kind": "definition" }, { "id": "definition-map-q02", "text": "What turns on the difference between them in practice?", "kind": "boundary" } ] } ] }, { "id": "operationalisation", "name": "Operationalisation", "description": "How it is measured or applied when it has to be.", "findings": [ { "id": "operational-record", "name": "Measures and proxies", "description": "Instruments and indicators used to stand in for it.", "questions": [ { "id": "operational-record-q01", "text": "How is electrophoresis operationalised or measured in practice, and by what instrument?", "kind": "measurement" }, { "id": "operational-record-q02", "text": "What does that operationalisation leave out, and when does that matter?", "kind": "boundary" } ] } ] } ] }, { "id": "instances-and-use", "name": "Instances, use and consequence", "description": "What counts as an instance of electrophoresis and what follows from calling something that.", "rationale": "Applying a concept is an act with consequences, so a model must say what the label licenses and what it does not.", "layers": [ { "id": "instances", "name": "What counts as an instance", "description": "Clear cases, borderline cases and non-cases.", "findings": [ { "id": "instance-tests", "name": "Tests for an instance", "description": "What would settle whether something falls under it.", "questions": [ { "id": "instance-tests-q01", "text": "What would settle whether something is an instance of electrophoresis?", "kind": "boundary" }, { "id": "instance-tests-q02", "text": "Which borderline cases are argued about, and on what grounds?", "kind": "definition" } ] } ] }, { "id": "consequence", "name": "Consequence of application", "description": "Rights, duties or decisions that follow from the label.", "findings": [ { "id": "consequence-record", "name": "What the label licenses", "description": "What an agent may do once something is classified this way.", "questions": [ { "id": "consequence-record-q01", "text": "What follows practically once something is treated as electrophoresis?", "kind": "action" }, { "id": "consequence-record-q02", "text": "What must an agent not infer from the label alone?", "kind": "action" } ] } ] } ] }, { "id": "provenance-and-evidence", "name": "Provenance, evidence and time", "description": "Where every claim about a electrophoresis came from and when it held.", "rationale": "A claim without a source and a time cannot be superseded, only overwritten, and an agent that overwrites loses the ability to explain itself.", "layers": [ { "id": "source-and-authority", "name": "Source and authority", "description": "Who said it, on what evidence, and how strongly.", "findings": [ { "id": "claim-provenance", "name": "Claim provenance and confidence", "description": "The authority behind each claim about a electrophoresis and how confident it is.", "questions": [ { "id": "claim-provenance-q01", "text": "What identifies and describes a claim about a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "claim-provenance-q02", "text": "Who or what asserted this about a claim about a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "claim-provenance-q03", "text": "What may an agent decide or do once a claim about a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "time-and-versions", "name": "Time, versions and supersession", "description": "When a claim was true, when it was learnt, and what replaced it.", "findings": [ { "id": "validity-and-supersession", "name": "Validity period and supersession", "description": "How an old claim about a electrophoresis is retired without being erased.", "questions": [ { "id": "validity-and-supersession-q01", "text": "What identifies and describes the validity of a claim about a electrophoresis, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "validity-and-supersession-q02", "text": "Who or what asserted this about the validity of a claim about a electrophoresis, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "validity-and-supersession-q03", "text": "What may an agent decide or do once the validity of a claim about a electrophoresis is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] } ] }, "statistics": { "bundles": 6, "layers": 12, "findings": 14, "questions": 38 } } } }