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Research draft

essential amino acid

vr.tr.essential-amino-acid · PHY.MAT

Let an agent explain essential amino acids and which they are, relay biochemistry, nutrition and protein quality from scientific references, describe dietary sources in general terms, and distinguish essential from conditionally essential and non-essential amino acids and from the specific threonine isomers listed as aliases.

Thing Registry Physical world and living systems

Research draft, second pass

A second pass drafted this model: the structure a model of this thing needs, and what is known about it in the world. The line under this one says how the second half was obtained - researched against sources, or recalled without web access, in which case nothing here was read anywhere and every claim is a lead to verify. Unreviewed either way.

written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify

Researched by: Claude

Purpose and description

Let an agent explain essential amino acids and which they are, relay biochemistry, nutrition and protein quality from scientific references, describe dietary sources in general terms, and distinguish essential from conditionally essential and non-essential amino acids and from the specific threonine isomers listed as aliases.

An amino acid that the human body cannot synthesise and must obtain from food, comprising histidine, isoleucine, leucine, lysine, methionine, phenylalanine, threonine, tryptophan and valine, with threonine also known systematically as 2-amino-3-hydroxybutanoic acid and occurring in stereoisomers such as L-threonine, D-threonine and allo-threonine and labelled forms used in research; essential amino acids are the basis of protein quality assessment in nutrition.

What it is for: Not applicable; a class of nutrients.

It can be explain the class; relay biochemistry and nutrition; describe dietary sources; distinguish related categories.

Distinguishing features

Not synthesised by humans

Dietary requirement

Protein quality basis

Species-dependent

What it looks like

Not a visible object; molecules in proteins.

Physical character

essential amino acids in humans: 9 count

threonine formula: C4H9NO3 formula

protein quality score: DIAAS note - FAO 2013

How it is recognised

Amino acid that must come from the diet

Histidine, isoleucine, leucine, lysine, methionine, phenylalanine, threonine, tryptophan, valine

Non-essential amino acids are synthesised; conditionally essential ones are needed in some states

Related models

is a kind of - in registry terms

amino acid

is exemplified by - named in the aliases

threonine

is contrasted with - synthesised by the body

non-essential amino acid

is assessed by - scores such as DIAAS

protein quality

In practice

Families and kinds

branched-chain amino acids leucine, isoleucine and valine

aromatic amino acids phenylalanine and tryptophan

sulphur-containing methionine

lysine, threonine and histidine

threonine stereoisomers and labelled forms

conditionally essential amino acids

Identifiers

ChEBI CHEBI:33709 amino acid class

CAS 72-19-5 L-threonine

Standards and regulation

FAO and WHO protein and amino acid requirements

Food labelling rules

Feed regulations for amino acid supplements

Failure modes and hazards

Agents giving personal nutrition advice

Confusing essential and non-essential lists across species

Registry aliases naming isomers of one acid

Also called

2-amino-3-hydroxybutanoic acidL-threonine zwitterionallo-D-threonineallo-L-threonineD-threonineL-(1-¹³C)Threonine2-amino-3-methylpentanoic acidDL-isoleucineL-isoleucine zwitterionD/L-alloisoleucineL-allo-IsoleucineL-isoleucinateL-isoleuciniumD-isoleucinateD-isoleuciniumL-Isoleucine-15N(¹⁴C₆)Isoleucineconditionally essential amino acids

Where this came from

wikidata · CC0 1.0

Also registered as vr.tr.essential-amino-acid

Drafted structure

Bundle to layer to finding to question, as the second pass will find it: 4 bundles · 8 layers · 8 findings · 16 questions.

Understand What essential amino acids are.

Science.

Definition

Definition.

Definition

Definition.

  1. What are essential amino acids, and how do they differ from conditionally essential and non-essential ones? definition
  2. Is the question about the class, a specific acid, nutrition or a personal diet? boundary

List

The nine.

List

List.

  1. What are the nine essential amino acids, and what does each do? definition
  2. Which entry fits the specific amino acid? action
Nutrition Nutrition.

Science.

Sources

Dietary sources.

Sources

Sources.

  1. Which foods provide complete proteins, and how do plant proteins combine, in general terms? provenance
  2. Is the user asking for personal dietary advice, which needs a professional? boundary

Quality

Protein quality.

Quality

Quality.

  1. How do PDCAAS and DIAAS assess protein quality? provenance
  2. Which references are standard? provenance
Chemistry Chemistry.

Science.

Threonine

Threonine.

Threonine

Threonine.

  1. What is threonine, and what are its L, D and allo stereoisomers and labelled forms? provenance
  2. Which sources are cited? provenance

Metabolism

Metabolism.

Metabolism

Metabolism.

  1. How are essential amino acids absorbed, used and degraded? provenance
  2. Which entry fits amino acid metabolism? action
Context Health and history.

Context.

Health

Deficiency and disease.

Health

Health.

  1. What happens in amino acid deficiency and in disorders such as phenylketonuria, in general terms? provenance
  2. Which entry fits protein-energy malnutrition? action

History

History.

History

History.

  1. How were essential amino acids identified by William Rose and others? provenance
  2. Which entry fits the history of nutrition science? action

What the second pass must settle

  • Should threonine and the branched-chain amino acids be separate primary entries?
  • How should nutrition references be linked?
  • The registry entry has merged aliases naming threonine isomers; should they be split off?