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Research draft

microorganism

vr.tr.microorganism · PHY.LIV

Let an agent handle microorganisms by group, habitat, roles, health relevance and uses, without diagnosis or unsafe laboratory detail.

Thing Registry Physical world and living systems

Research draft, second pass

A second pass drafted this model: the structure a model of this thing needs, and what is known about it in the world. The line under this one says how the second half was obtained - researched against sources, or recalled without web access, in which case nothing here was read anywhere and every claim is a lead to verify. Unreviewed either way.

written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify

Researched by: Claude

Purpose and description

Let an agent handle microorganisms by group, habitat, roles, health relevance and uses, without diagnosis or unsafe laboratory detail.

A living organism too small to be seen with the naked eye, including bacteria, archaea, many fungi, protists and microscopic algae, with viruses often discussed alongside; microorganisms live almost everywhere, including deep underground.

What it is for: Ecosystems, health, food, industry and research.

It can be classify microorganisms by group; explain beneficial and harmful roles; find hygiene and public health guidance; describe uses in food and biotechnology.

Distinguishing features

Microscopic

Very diverse

Found almost everywhere

Mostly harmless or beneficial

What it looks like

Invisible to the eye; seen under microscopes or as colonies and films.

How it is recognised

Bacteria, archaea, fungi, protists

Microscopy and culture

Viruses are acellular and often classed separately

Related models

is a kind of - category

organism

includes - group

bacteria

forms - community

microbiome

is studied by - field

microbiology

In practice

Families and kinds

bacteria

archaea

microscopic fungi such as yeasts

protists

microalgae

Standards and regulation

Biosafety level rules

Food hygiene law

Nagoya Protocol on genetic resources

Failure modes and hazards

Agents diagnosing infections

Unsafe culturing at home

Unverified probiotic claims

Also called

Intraterrestrialextraterrestrial microorganismpathogenic microorganismsBrockarchaeotamulticellular magnetotactic prokaryotenonpathogenic organismsMicroswimmerinvasive microbeobeliskantagonistic microorganismnon-cellular lifemicro-animalprobioticspigment-producing microorganismspsychobioticMarine microorganismacetogenmicroaerophilelithophileosmophilebioeffectorBiohybrid microswimmerssubviral agentLinexProbiotics in pediatrics

Where this came from

wikidata · CC0 1.0

Also registered as vr.tr.microorganism

Drafted structure

Bundle to layer to finding to question, as the second pass will find it: 4 bundles · 8 layers · 8 findings · 16 questions.

Groups Which microbe.

Groups differ.

Group

Classification.

Group

Microbial group.

  1. Which group does the microorganism belong to? definition
  2. Which taxonomy database confirms its name? provenance

Habitat

Where found.

Habitat

Habitat.

  1. Where does it live, including extreme environments? provenance
  2. What role does it play there? definition
Health Infections and microbiome.

Clinicians diagnose.

Infection

Seeking care.

Infection

Infection concerns.

  1. Are symptoms severe or worsening, needing medical care? boundary
  2. Which service should be contacted? action

Microbiome

Evidence.

Microbiome

Microbiome claims.

  1. What does evidence say about this microbiome or probiotic claim? provenance
  2. Is the claim authorised? boundary
Uses Beneficial roles.

Microbes are useful.

Food

Fermentation.

Food

Fermentation.

  1. Which microorganisms are used to make this food or drink? provenance
  2. How is safety ensured? provenance

Industry

Biotechnology.

Industry

Biotechnology.

  1. How are microorganisms used in medicine, industry or waste treatment? definition
  2. Which regulations apply? provenance
Safety Hygiene and biosafety.

Safety rules apply.

Hygiene

Prevention.

Hygiene

Hygiene.

  1. Which hygiene measures reduce harmful microbes, according to health authorities? provenance
  2. When is disinfection needed? boundary

Laboratory

Biosafety.

Laboratory

Biosafety.

  1. Is someone planning to culture microbes outside a proper laboratory? boundary
  2. What safe alternatives exist for education? action

What the second pass must settle

  • Should microbial groups be separate entries?
  • How should taxonomy databases be linked?
  • How should viruses be related?