{ "model": { "rank": 3727, "code": "thing-q79927", "model_id": "vr.tr.endoplasmic-reticulum", "name": "endoplasmic reticulum", "purpose": "Let an agent explain the endoplasmic reticulum and its subtypes, relay their structure and functions from cell biology sources, describe the sarcoplasmic reticulum in muscle, and relay its roles in disease.", "family": "Thing Registry", "category": "Physical world and living systems", "status": "research-draft", "kind": "thing", "plane": "PHY", "domain": "PHY.LIV", "industry": "", "version": "", "url": "/models/thing/q79927/", "tier": 2, "score": 82, "payload": { "layer": "wikidata", "aliases": [ "smooth endoplasmic reticulum", "rough endoplasmic reticulum", "sarcoplasmic reticulum", "sarcoplasmic reticulum of cardiac muscle cell", "sarcoplasmic reticulum of smooth muscle cell", "sarcoplasmic reticulum of skeletal muscle cell", "Sarcoplasmic reticulum", "plasmodesmatal endoplasmic reticulum", "membrane stack", "Endoplasmic reticulum of striated muscle cell", "Endoplasmic reticulum of smooth muscle cell" ], "aliasCount": 11, "merged": 11, "knownIn": 82, "facets": null, "markers": [], "lexicalClass": "", "senseRank": null, "alsoRegisteredAs": null, "source": { "dataset": "wikidata", "item": "Q79927", "url": "https://www.wikidata.org/wiki/Q79927", "license": "CC0 1.0" } }, "research": { "vercy": "1.0-draft", "publication": { "status": "research-draft", "adjudicationStatus": "unreviewed", "publishableCanonical": false, "generatedAt": "2026-09-12T22:59:37Z", "providers": [ "Claude" ], "breadth": "written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify", "pass": 2, "wave": 3, "engine": "claude" }, "metaModel": { "id": "THING-Q79927", "registryId": "vr.tr.endoplasmic-reticulum", "name": "endoplasmic reticulum", "version": "0.2.0-wave.3", "entryKind": "thing", "family": "Thing Registry", "domain": [ "PHY.LIV" ], "status": "research-draft" }, "canonicalUrl": "https://ver.cy/models/thing/q79927/", "model": { "registry_id": "vr.tr.endoplasmic-reticulum", "name": "endoplasmic reticulum", "purpose": "Let an agent explain the endoplasmic reticulum and its subtypes, relay their structure and functions from cell biology sources, describe the sarcoplasmic reticulum in muscle, and relay its roles in disease.", "definition": "A network of membrane-enclosed tubules and sacs in the cytoplasm of eukaryotic cells, continuous with the nuclear envelope, divided into rough endoplasmic reticulum studded with ribosomes that synthesises and folds secreted and membrane proteins, and smooth endoplasmic reticulum that makes lipids, detoxifies compounds and stores calcium; in muscle cells the specialised sarcoplasmic reticulum releases calcium to trigger contraction.", "what_it_is_for": "Protein and lipid synthesis, calcium storage and detoxification in cells.", "affordances": [ "explain structure and subtypes", "relay functions", "describe the sarcoplasmic reticulum", "relay roles in disease" ], "distinguishing_features": [ "Rough and smooth regions", "Protein folding and quality control", "Calcium store", "Continuous with nuclear envelope" ], "appearance": "Not visible to the eye; seen by electron microscopy as membrane networks, rough with ribosomes or smooth.", "visual_identification": [ "Membrane network continuous with the nuclear envelope", "Rough and smooth regions, sarcoplasmic form in muscle", "The Golgi apparatus is a separate organelle downstream" ], "physical_properties": [ { "quantity": "share of cell membrane", "typical_range": "over half", "unit": "fraction", "note": "in many cells" } ], "families_and_kinds": [ "rough endoplasmic reticulum", "smooth endoplasmic reticulum", "sarcoplasmic reticulum of skeletal, cardiac and smooth muscle", "transitional and specialised subdomains" ], "related_models": [ { "relation": "is a kind of", "target": "membrane-bounded organelle", "why": "in registry terms" }, { "relation": "is continuous with", "target": "nuclear envelope", "why": "the outer membrane" }, { "relation": "sends proteins to", "target": "Golgi apparatus", "why": "in the secretory pathway" }, { "relation": "stores", "target": "calcium", "why": "for signalling and contraction" } ], "identifiers": [ { "scheme": "Gene Ontology", "value_or_pattern": "GO:0005783", "note": "endoplasmic reticulum" } ], "standards_and_regulation": [ "No regulation; research standards and nomenclature" ], "failure_modes_and_hazards": [ "ER stress and protein misfolding diseases", "Muscle diseases from sarcoplasmic reticulum defects", "Confusing subtypes" ], "in_scope": [], "out_of_scope": [], "characteristics": [] }, "sources": [], "structure": { "bundles": [ { "id": "structure", "name": "Structure", "description": "Structure and subtypes.", "rationale": "Science.", "layers": [ { "id": "structure", "name": "Structure", "description": "Structure.", "findings": [ { "id": "structure-finding", "name": "Structure", "description": "Structure.", "questions": [ { "text": "How is the endoplasmic reticulum organised, and how do rough and smooth regions differ?", "kind": "definition" }, { "text": "Is the organelle the ER, the Golgi apparatus or another membrane system?", "kind": "boundary" } ] } ] }, { "id": "muscle", "name": "Muscle", "description": "Sarcoplasmic reticulum.", "findings": [ { "id": "muscle-finding", "name": "Muscle", "description": "Muscle.", "questions": [ { "text": "What is the sarcoplasmic reticulum, and how does it differ across muscle types?", "kind": "definition" }, { "text": "Which entry fits muscle contraction?", "kind": "action" } ] } ] } ] }, { "id": "function", "name": "Function", "description": "Functions.", "rationale": "Science.", "layers": [ { "id": "proteins", "name": "Proteins", "description": "Protein synthesis and folding.", "findings": [ { "id": "proteins-finding", "name": "Proteins", "description": "Proteins.", "questions": [ { "text": "How does the rough ER synthesise, fold and check secreted and membrane proteins?", "kind": "provenance" }, { "text": "Which entry fits the secretory pathway?", "kind": "action" } ] } ] }, { "id": "lipids", "name": "Lipids", "description": "Lipids, calcium and detoxification.", "findings": [ { "id": "lipids-finding", "name": "Lipids", "description": "Lipids.", "questions": [ { "text": "How does the smooth ER make lipids, store calcium and detoxify compounds?", "kind": "provenance" }, { "text": "Which references are standard?", "kind": "provenance" } ] } ] } ] }, { "id": "disease", "name": "Disease", "description": "Disease and stress.", "rationale": "Application.", "layers": [ { "id": "stress", "name": "Stress", "description": "ER stress.", "findings": [ { "id": "stress-finding", "name": "Stress", "description": "Stress.", "questions": [ { "text": "What is ER stress and the unfolded protein response, and which diseases involve them, with findings attributed?", "kind": "provenance" }, { "text": "Is the user asking about a personal condition, which needs a clinician?", "kind": "boundary" } ] } ] }, { "id": "muscle", "name": "Muscle", "description": "Muscle disease.", "findings": [ { "id": "muscle-finding", "name": "Muscle", "description": "Muscle.", "questions": [ { "text": "Which muscle and heart conditions involve the sarcoplasmic reticulum?", "kind": "provenance" }, { "text": "Which entry fits the specific condition?", "kind": "action" } ] } ] } ] }, { "id": "study", "name": "Study", "description": "Methods and history.", "rationale": "Study.", "layers": [ { "id": "methods", "name": "Methods", "description": "Methods.", "findings": [ { "id": "methods-finding", "name": "Methods", "description": "Methods.", "questions": [ { "text": "How is the ER studied, from electron microscopy to live imaging?", "kind": "provenance" }, { "text": "Which sources are cited?", "kind": "provenance" } ] } ] }, { "id": "history", "name": "History", "description": "History.", "findings": [ { "id": "history-finding", "name": "History", "description": "History.", "questions": [ { "text": "How was the ER discovered and characterised by Porter, Palade and others?", "kind": "provenance" }, { "text": "Which entry fits the history of cell biology?", "kind": "action" } ] } ] } ] } ] }, "openQuestions": [ "Should the sarcoplasmic reticulum be a separate entry?", "How should Gene Ontology terms be linked?", "The registry entry has merged aliases naming subtypes; should they be split off?" ], "statistics": { "bundles": 4, "layers": 8, "findings": 8, "questions": 16 } }, "draft": { "generator": "vr.draft.v3", "status": "draft-generated", "researched": false, "archetype": "organism", "method": "Written from the archetype playbook - what this kind of thing needs beyond identity and provenance - and from the structure that recurred across 6,333 models already researched by two engines. Applied to this entry by rule. No source was read for this thing and no claim here is researched. This entry carries no facets of its own, so they were inferred from its domain - a guess about a whole domain applied to one thing.", "facetsInferred": true, "nextPass": "A researcher replaces this draft with a sourced specification. Treat every sentence below as a proposal to argue with.", "purpose": "Give an agent a durable, checkable way to recognise a endoplasmic reticulum, record what state it is in, and decide what may be done with it.", "whatItIs": "Let an agent explain the endoplasmic reticulum and its subtypes, relay their structure and functions from cell biology sources, describe the sarcoplasmic reticulum in muscle, and relay its roles in disease.", "characteristics": { "substance": "living", "origin": "natural", "agency": "autonomous", "mobility": "self-moving" }, "whatYouCanDoWithIt": [ "observed and measured" ], "distinguishingFeatures": [ "Names folded into this entry, which a task may need to split apart again: smooth endoplasmic reticulum, rough endoplasmic reticulum, sarcoplasmic reticulum, sarcoplasmic reticulum of cardiac muscle cell, sarcoplasmic reticulum of smooth muscle cell, sarcoplasmic reticulum of skeletal muscle cell, Sarcoplasmic reticulum, plasmodesmatal endoplasmic reticulum, membrane stack, Endoplasmic reticulum of striated muscle cell, Endoplasmic reticulum of smooth muscle cell.", "11 finer distinctions are held as aliases rather than separate entries, because telling them apart needs a task that asks for it.", "Described in 82 Wikipedia languages, which is a measure of how widely the thing is known, not of how important it is." ], "openQuestionsForResearch": [ "Which of the bundles below does a real task actually need, and which are ceremony?", "What does this thing have that the facets do not capture at all?", "Which neighbouring kind is most often confused with a endoplasmic reticulum, and on what evidence are they told apart?" ], "whatItIsMadeOf": "a living thing", "physicalCharacter": [ "Moves under its own power or of its own accord.", "Acts on its own behalf.", "These come from the domain this entry sits in rather than from the entry itself, so treat them as a first guess about the whole domain applied to one thing." ], "whatCanBeDoneWithIt": [ "observe it, measure it, record its state" ], "howItIsRecognised": [ "Recognised by diagnostic characters, and those differ by life stage - the young of many kinds are mistaken for other kinds entirely. A sighting is settled by characters, a photograph and a place, not by a name alone." ], "relatedModels": [ { "relation": "covers", "note": "Finer kinds folded into this entry because telling them apart needs a task that asks for it. Each is a model waiting to be split out when one does.", "targets": [ "smooth endoplasmic reticulum", "rough endoplasmic reticulum", "sarcoplasmic reticulum", "sarcoplasmic reticulum of cardiac muscle cell", "sarcoplasmic reticulum of smooth muscle cell", "sarcoplasmic reticulum of skeletal muscle cell", "Sarcoplasmic reticulum", "plasmodesmatal endoplasmic reticulum", "membrane stack", "Endoplasmic reticulum of striated muscle cell", "Endoplasmic reticulum of smooth muscle cell" ] } ], "standing": "Described in 82 Wikipedia languages, which measures how widely it is written about rather than how important or how common it is. 11 finer distinctions are held inside this entry as names rather than as separate models.", "structure": { "bundles": [ { "id": "identity-and-classification", "name": "Identity, naming and classification", "description": "How an agent tells one endoplasmic reticulum from another, and a endoplasmic reticulum from things that resemble it.", "rationale": "Recognition comes before every other claim. Without stable identity nothing else in the model can be trusted to be about the same thing twice.", "layers": [ { "id": "naming-and-identifiers", "name": "Names and identifiers", "description": "The names this thing goes by and the identifiers that survive translation and time.", "findings": [ { "id": "preferred-name-and-aliases", "name": "Preferred name, aliases and local names", "description": "Which name to use, which names mean the same thing, and which merely sound similar.", "questions": [ { "id": "preferred-name-and-aliases-q01", "text": "What identifies and describes the name of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "preferred-name-and-aliases-q02", "text": "Who or what asserted this about the name of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "preferred-name-and-aliases-q03", "text": "What may an agent decide or do once the name of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] }, { "id": "stable-identifiers", "name": "Stable identifiers and external keys", "description": "Identifiers that keep pointing at this kind of thing across systems and languages.", "questions": [ { "id": "stable-identifiers-q01", "text": "What identifies and describes an identifier for a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "stable-identifiers-q02", "text": "Who or what asserted this about an identifier for a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "stable-identifiers-q03", "text": "What may an agent decide or do once an identifier for a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "classification-and-granularity", "name": "Classification and granularity", "description": "Where a endoplasmic reticulum sits among kinds, and how finely a task needs to cut it.", "findings": [ { "id": "kind-and-parents", "name": "Kind, parents and neighbouring kinds", "description": "The classes this thing belongs to and the ones it is next to.", "questions": [ { "id": "kind-and-parents-q01", "text": "What identifies and describes the kind of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "kind-and-parents-q02", "text": "Who or what asserted this about the kind of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "kind-and-parents-q03", "text": "What may an agent decide or do once the kind of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] }, { "id": "distinguishing-features", "name": "Distinguishing features", "description": "What separates a endoplasmic reticulum from the things most often confused with it.", "questions": [ { "id": "distinguishing-features-q01", "text": "What identifies and describes what distinguishes a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "distinguishing-features-q02", "text": "Who or what asserted this about what distinguishes a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "distinguishing-features-q03", "text": "What may an agent decide or do once what distinguishes a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] }, { "id": "form-and-composition", "name": "Form, composition and condition", "description": "What a endoplasmic reticulum is made of, what shape and size it takes, and what state it is in.", "rationale": "A physical thing can be measured, and a model that cannot record its measurements cannot support any decision that depends on them.", "layers": [ { "id": "form-and-dimensions", "name": "Form and dimensions", "description": "Shape, size, mass and the ranges these take across examples.", "findings": [ { "id": "measurable-dimensions", "name": "Measurable dimensions and their units", "description": "The quantities worth recording and the units they are recorded in.", "questions": [ { "id": "measurable-dimensions-q01", "text": "What identifies and describes the dimensions of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "measurable-dimensions-q02", "text": "Who or what asserted this about the dimensions of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "measurable-dimensions-q03", "text": "What may an agent decide or do once the dimensions of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "material-and-composition", "name": "Material and composition", "description": "Anatomy, parts and life stage.", "findings": [ { "id": "parts-and-materials", "name": "Parts and life stages", "description": "The parts of a endoplasmic reticulum and the stages it passes through.", "questions": [ { "id": "parts-and-materials-q01", "text": "What identifies and describes the composition of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "parts-and-materials-q02", "text": "Who or what asserted this about the composition of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "parts-and-materials-q03", "text": "What may an agent decide or do once the composition of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "condition-and-integrity", "name": "Condition and integrity", "description": "Wear, damage, health and the difference between working and broken.", "findings": [ { "id": "condition-assessment", "name": "Condition, damage and health", "description": "How the condition of a endoplasmic reticulum is judged and by whom.", "questions": [ { "id": "condition-assessment-q01", "text": "What identifies and describes the condition of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "condition-assessment-q02", "text": "Who or what asserted this about the condition of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "condition-assessment-q03", "text": "What may an agent decide or do once the condition of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] }, { "id": "place-and-movement", "name": "Place and movement", "description": "Where a endoplasmic reticulum is, how it got there and where it may go (self-moving).", "rationale": "A thing that can move needs its position recorded with a time, or every later claim about it is about a place it has left.", "layers": [ { "id": "location-and-placement", "name": "Location and placement", "description": "Position, containment and the reference frame the position is given in.", "findings": [ { "id": "position-and-frame", "name": "Position, container and reference frame", "description": "Where a endoplasmic reticulum is, and what that position is measured against.", "questions": [ { "id": "position-and-frame-q01", "text": "What identifies and describes the location of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "position-and-frame-q02", "text": "Who or what asserted this about the location of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "position-and-frame-q03", "text": "What may an agent decide or do once the location of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "movement-and-transfer", "name": "Movement and transfer", "description": "How a endoplasmic reticulum moves on its own.", "findings": [ { "id": "movement-events", "name": "Movement events and constraints", "description": "What counts as a movement, what records it and what limits it.", "questions": [ { "id": "movement-events-q01", "text": "What identifies and describes the movement of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "movement-events-q02", "text": "Who or what asserted this about the movement of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "movement-events-q03", "text": "What may an agent decide or do once the movement of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] }, { "id": "state-and-lifecycle", "name": "State and lifecycle", "description": "The states a endoplasmic reticulum passes through and the events that move it between them.", "rationale": "Most decisions about a thing depend on what state it is in now, which is a claim with a time on it, not a property.", "layers": [ { "id": "lifecycle-stages", "name": "Lifecycle stages", "description": "From coming into existence to ceasing to be one of these.", "findings": [ { "id": "stages-and-transitions", "name": "Stages and transitions", "description": "The stages worth naming and what moves a endoplasmic reticulum between them.", "questions": [ { "id": "stages-and-transitions-q01", "text": "What identifies and describes the lifecycle of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "stages-and-transitions-q02", "text": "Who or what asserted this about the lifecycle of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "stages-and-transitions-q03", "text": "What may an agent decide or do once the lifecycle of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "observations-and-status", "name": "Observations and current status", "description": "What is observed about a endoplasmic reticulum, how often and by whom.", "findings": [ { "id": "observation-record", "name": "Observation record", "description": "How an observation of a endoplasmic reticulum is recorded so that it can be superseded rather than overwritten.", "questions": [ { "id": "observation-record-q01", "text": "What identifies and describes an observation of a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "observation-record-q02", "text": "Who or what asserted this about an observation of a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "observation-record-q03", "text": "What may an agent decide or do once an observation of a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] }, { "id": "taxonomic-placement", "name": "Taxonomic placement and identification", "description": "What endoplasmic reticulum is called scientifically, by whose authority, and how a specimen is recognised.", "rationale": "Names change with revisions while the organism does not, so a name without its authority and date cannot be reconciled later.", "layers": [ { "id": "accepted-name", "name": "Accepted name and synonymy", "description": "The current binomial, its author and date, and the names it replaced.", "findings": [ { "id": "name-and-authority", "name": "Accepted name, authority and synonyms", "description": "What to record so a later revision can be applied without losing the old data.", "questions": [ { "id": "name-and-authority-q01", "text": "What is the accepted scientific name of endoplasmic reticulum, with its author and year, and which synonyms does it absorb?", "kind": "definition" }, { "id": "name-and-authority-q02", "text": "Which taxonomic authority is being followed, and what would a competing authority say?", "kind": "provenance" } ] } ] }, { "id": "field-identification", "name": "Field identification", "description": "The characters that separate endoplasmic reticulum from what it is confused with.", "findings": [ { "id": "diagnostic-characters", "name": "Diagnostic characters and confusable kinds", "description": "Features that settle an identification, and those that only suggest it.", "questions": [ { "id": "diagnostic-characters-q01", "text": "Which observable characters distinguish endoplasmic reticulum from its closest look-alikes, and at which life stage are they visible?", "kind": "boundary" }, { "id": "diagnostic-characters-q02", "text": "What evidence is enough to record an identification as confirmed rather than provisional?", "kind": "provenance" } ] } ] } ] }, { "id": "life-cycle-and-condition", "name": "Life stages, condition and behaviour", "description": "What endoplasmic reticulum does over its life and how its state is judged.", "rationale": "Stage and condition change what may be done - handled, treated, harvested, left alone - and both are observations with a time.", "layers": [ { "id": "stages-and-reproduction", "name": "Stages and reproduction", "description": "Development from origin to death, including forms that look like different animals.", "findings": [ { "id": "life-stages", "name": "Life stages and their marks", "description": "The stages worth recording and what tells them apart.", "questions": [ { "id": "life-stages-q01", "text": "What stages does endoplasmic reticulum pass through, and what observable change marks each transition?", "kind": "definition" }, { "id": "life-stages-q02", "text": "Which stages are so unlike the adult that they are mistaken for another kind?", "kind": "boundary" } ] } ] }, { "id": "health-and-condition", "name": "Health and condition", "description": "How condition is assessed and by whom.", "findings": [ { "id": "condition-assessment", "name": "Condition assessment", "description": "Signs of health, injury and stress, and who is competent to judge them.", "questions": [ { "id": "condition-assessment-q01", "text": "How is the condition of endoplasmic reticulum judged, on what scale, and by whom?", "kind": "measurement" }, { "id": "condition-assessment-q02", "text": "What condition obliges an agent to act, and what act is permitted to whom?", "kind": "action" } ] } ] } ] }, { "id": "range-and-status", "name": "Habitat, range and conservation status", "description": "Where endoplasmic reticulum lives and how threatened it is.", "rationale": "Range and status govern what is lawful, and both are assessments with an assessor and a year rather than facts of nature.", "layers": [ { "id": "habitat-and-range", "name": "Habitat and range", "description": "Native range, introductions and the habitat it needs.", "findings": [ { "id": "range-record", "name": "Range, introductions and habitat", "description": "What to record about where it is found and how it got there.", "questions": [ { "id": "range-record-q01", "text": "What is the native range of endoplasmic reticulum, where has it been introduced, and what habitat does it require?", "kind": "definition" }, { "id": "range-record-q02", "text": "What distinguishes a native record from an introduced or vagrant one?", "kind": "boundary" } ] } ] }, { "id": "protection-status", "name": "Protection and legal status", "description": "Conservation assessments and the rules that follow from them.", "findings": [ { "id": "status-and-rules", "name": "Conservation status and legal consequence", "description": "The assessment, its date, and what it forbids or requires where.", "questions": [ { "id": "status-and-rules-q01", "text": "What conservation status does endoplasmic reticulum hold, under which assessment and year?", "kind": "provenance" }, { "id": "status-and-rules-q02", "text": "What does that status forbid or require of an agent, and in which jurisdiction?", "kind": "action" } ] } ] } ] }, { "id": "provenance-and-evidence", "name": "Provenance, evidence and time", "description": "Where every claim about a endoplasmic reticulum came from and when it held.", "rationale": "A claim without a source and a time cannot be superseded, only overwritten, and an agent that overwrites loses the ability to explain itself.", "layers": [ { "id": "source-and-authority", "name": "Source and authority", "description": "Who said it, on what evidence, and how strongly.", "findings": [ { "id": "claim-provenance", "name": "Claim provenance and confidence", "description": "The authority behind each claim about a endoplasmic reticulum and how confident it is.", "questions": [ { "id": "claim-provenance-q01", "text": "What identifies and describes a claim about a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "claim-provenance-q02", "text": "Who or what asserted this about a claim about a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "claim-provenance-q03", "text": "What may an agent decide or do once a claim about a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] }, { "id": "time-and-versions", "name": "Time, versions and supersession", "description": "When a claim was true, when it was learnt, and what replaced it.", "findings": [ { "id": "validity-and-supersession", "name": "Validity period and supersession", "description": "How an old claim about a endoplasmic reticulum is retired without being erased.", "questions": [ { "id": "validity-and-supersession-q01", "text": "What identifies and describes the validity of a claim about a endoplasmic reticulum, and in what units or vocabulary?", "kind": "definition", "answer_data": [ "identifiers", "types and classes", "values with units", "explicit unknowns" ] }, { "id": "validity-and-supersession-q02", "text": "Who or what asserted this about the validity of a claim about a endoplasmic reticulum, by which method, and when was it true?", "kind": "provenance", "answer_data": [ "authority", "method", "evidence", "event time", "knowledge time" ] }, { "id": "validity-and-supersession-q03", "text": "What may an agent decide or do once the validity of a claim about a endoplasmic reticulum is known, and what must it refuse?", "kind": "action", "answer_data": [ "permitted actions", "preconditions", "refusals", "escalation" ] } ] } ] } ] } ] }, "statistics": { "bundles": 8, "layers": 17, "findings": 19, "questions": 51 } } } }