{ "vercy": "1.0-draft", "publication": { "status": "research-draft", "adjudicationStatus": "unreviewed", "publishableCanonical": false, "generatedAt": "2026-09-11T05:07:43Z", "providers": [ "Claude" ], "breadth": "written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify", "pass": 2, "wave": 1, "engine": "claude", "enrichment": { "pass": 3, "engine": "claude", "producedAt": "2026-10-05T16:30:00Z", "ingestedAt": "2026-10-05T13:22:24+00:00", "fields": [ "agent_conduct", "ethics", "owners" ] }, "revisions": [ { "at": "2026-10-08T18:42:38+00:00", "engine": "codex", "fields": [ "definition" ], "answering_review": "df2c1a24d5fc621bc181eef516d6a9326fcbd601d568e46b15d3ebc03aef2807" }, { "at": "2026-10-08T19:02:56+00:00", "engine": "codex", "fields": [ "distinguishing_features" ], "answering_review": "23eba64758dad89cd6c2ad3f5fe9efb5bbedd0190318f9d0f08987d04777d491" } ], "gate": { "passed": true, "version": "1.0", "at": "2026-10-08T19:05:20+00:00", "evidence": [ "completeness 1.00", "sense: WordNet gloss", "2 live sources", "review by codex: pass" ] } }, "metaModel": { "id": "THING-CELL", "registryId": "vr.tr.cell", "name": "cell", "version": "0.2.0-wave.1", "entryKind": "thing", "family": "Thing Registry", "domain": [ "XCT.TOP" ], "status": "research-draft" }, "canonicalUrl": "https://ver.cy/models/thing/cell/", "model": { "registry_id": "vr.tr.cell", "name": "cell", "purpose": "Let an agent handle cells by type, organism, structure and state, as the unit underlying biology, medicine and biotechnology.", "definition": "In biology, the basic structural and functional unit of all organisms, bounded by a membrane and able to exist alone or as part of a multicellular body, typically containing genetic material, although some specialised cells, such as mature mammalian red blood cells, lack it.", "what_it_is_for": "Cells are the units of life; people study, culture and engineer them for medicine, research and industry.", "affordances": [ "observe it, under a microscope", "culture it, in laboratories under biosafety rules", "count and classify it, for diagnosis", "engineer it, in regulated biotechnology" ], "distinguishing_features": [ "A cell is a membrane-bound unit of life.", "Prokaryotic cells lack a nucleus; eukaryotic cells typically have one, although some specialised cells, such as mature mammalian red blood cells, lack a nucleus.", "Multicellular organisms contain specialised cell types.", "Other senses of cell, including battery, prison and spreadsheet senses, are different entries." ], "appearance": "Microscopic units, typically 1-100 micrometres, with a membrane and internal structures visible under staining; eggs and some algae are larger.", "visual_identification": [ "Microscopy with stains shows membrane, nucleus and organelles", "Shape and size suggest type; markers confirm it", "Eggs, roe and spawn are cells or clusters of them in everyday language" ], "physical_properties": [ { "quantity": "diameter", "typical_range": "1-100", "unit": "micrometres", "note": "bacteria about 1-2, human cells 10-30" }, { "quantity": "cells in a human body", "typical_range": "about 3.7 x 10^13", "unit": "cells", "note": "" } ], "families_and_kinds": [ "prokaryotic and eukaryotic cells", "animal, plant, fungal cells", "specialised types: neurons, blood cells, gametes", "stem cells", "cell lines in culture" ], "related_models": [ { "relation": "is part of", "target": "organism", "why": "organisms are made of cells" }, { "relation": "is studied by", "target": "biology", "why": "cell biology" }, { "relation": "contains", "target": "DNA", "why": "genetic material" }, { "relation": "is confused with", "target": "battery cell and other cells", "why": "homonyms" } ], "identifiers": [ { "scheme": "Cell Ontology id", "value_or_pattern": "CL: plus digits", "note": "cell types" }, { "scheme": "Cellosaurus accession", "value_or_pattern": "CVCL_ plus code", "note": "cell lines" } ], "standards_and_regulation": [ "Biosafety rules for cell culture", "Regulation of human tissues and cells, such as EU Directive 2004/23/EC", "Stem cell research regulations" ], "failure_modes_and_hazards": [ "Misidentified or contaminated cell lines", "Biosafety lapses with infected cultures", "Ethical breaches in human cell research" ], "in_scope": [], "out_of_scope": [], "characteristics": [], "agent_conduct": { "may": [ "Explain cell biology from reputable sources.", "Record cell line identity and authentication results in a lab it is authorized to support." ], "must_not": [ "Use cell lines that have not been authenticated as if they were.", "Advise work with infected or hazardous cultures outside biosafety rules.", "Use human cells or tissue without the donor's consent and ethics approval.", "Help modify cells to create a biological threat." ], "requires_human": [ "Approving research on human cells or embryos." ] }, "ethics": { "considerations": [ "Human cells come from people who have rights over how their tissue is used.", "Contaminated cell lines waste research and can mislead medicine." ], "affected_parties": [ "Donors of human cells", "Researchers", "Patients relying on research" ] }, "owners": { "steward": "The institution holding the cells, under the donor's consent and research ethics rules.", "master_systems": [ "Cell line repositories" ] } }, "sources": [ { "id": "oewn", "title": "Open English WordNet 2024, synset oewn-00006484-n", "url": "https://en-word.net/id/oewn-00006484-n", "what_it_supports": "sense and gloss of the concept", "url_status": "live", "checked_by": "http 200" }, { "id": "wiktionary-en", "title": "Wiktionary: cell", "url": "https://en.wiktionary.org/wiki/cell", "what_it_supports": "word senses and usage", "url_status": "live", "checked_by": "http 200" } ], "structure": { "bundles": [ { "id": "type", "name": "Type", "description": "What kind of cell.", "rationale": "Cell type decides function and handling.", "layers": [ { "id": "classification", "name": "Classification", "description": "Prokaryote, eukaryote, cell type.", "findings": [ { "id": "classification-finding", "name": "Cell type", "description": "The cell type.", "questions": [ { "text": "What type of cell is this, by Cell Ontology term?", "kind": "definition" }, { "text": "From which organism and tissue?", "kind": "provenance" } ] } ] }, { "id": "markers", "name": "Markers", "description": "How type is confirmed.", "findings": [ { "id": "markers-finding", "name": "Markers", "description": "Markers used.", "questions": [ { "text": "Which markers confirm the type?", "kind": "measurement" }, { "text": "How reliable is that identification?", "kind": "measurement" } ] } ] } ] }, { "id": "structure-and-function", "name": "Structure and function", "description": "What it has and does.", "rationale": "Structure explains function.", "layers": [ { "id": "structure", "name": "Structure", "description": "Membrane and organelles.", "findings": [ { "id": "structure-finding", "name": "Structure", "description": "Structures present.", "questions": [ { "text": "Which structures does it have?", "kind": "definition" }, { "text": "How large is it?", "kind": "measurement" } ] } ] }, { "id": "function", "name": "Function", "description": "Role in the organism.", "findings": [ { "id": "function-finding", "name": "Function", "description": "What it does.", "questions": [ { "text": "What is its function?", "kind": "definition" }, { "text": "How does it divide or die?", "kind": "definition" } ] } ] } ] }, { "id": "culture-and-research", "name": "Culture and research", "description": "Working with cells.", "rationale": "Cultured cells need authentication and biosafety.", "layers": [ { "id": "culture", "name": "Culture", "description": "Growing cells.", "findings": [ { "id": "culture-finding", "name": "Culture conditions", "description": "Culture conditions.", "questions": [ { "text": "Under what conditions is it cultured?", "kind": "definition" }, { "text": "Has the cell line been authenticated?", "kind": "provenance" } ] } ] }, { "id": "biosafety", "name": "Biosafety", "description": "Containment.", "findings": [ { "id": "biosafety-finding", "name": "Biosafety level", "description": "Required containment.", "questions": [ { "text": "Which biosafety level applies?", "kind": "boundary" }, { "text": "Could it carry pathogens?", "kind": "boundary" } ] } ] } ] }, { "id": "ethics-and-medicine", "name": "Ethics and medicine", "description": "Human cells and therapy.", "rationale": "Human cells raise consent and regulatory questions.", "layers": [ { "id": "consent", "name": "Consent", "description": "Donor consent.", "findings": [ { "id": "consent-finding", "name": "Consent", "description": "Consent for human cells.", "questions": [ { "text": "Was donor consent obtained, and for what uses?", "kind": "provenance" }, { "text": "Is the donor identity protected?", "kind": "boundary" } ] } ] }, { "id": "therapy", "name": "Therapy", "description": "Cell therapies.", "findings": [ { "id": "therapy-finding", "name": "Therapy status", "description": "Regulatory status.", "questions": [ { "text": "Is a cell therapy approved, or experimental?", "kind": "provenance" }, { "text": "Where should people get reliable information?", "kind": "action" } ] } ] } ] } ] }, "openQuestions": [ "Should cell types be separate entries using the Cell Ontology?", "How should cell lines be linked to Cellosaurus?", "The registry entry has merged aliases such as roe and silkworm seed; should they be split off?" ], "statistics": { "bundles": 4, "layers": 8, "findings": 8, "questions": 16 } }