{
  "vercy": "1.0-draft",
  "publication": {
    "status": "research-draft",
    "adjudicationStatus": "unreviewed",
    "publishableCanonical": false,
    "generatedAt": "2026-09-11T10:31:22Z",
    "providers": [
      "Claude"
    ],
    "breadth": "written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify",
    "pass": 2,
    "wave": 1,
    "engine": "claude",
    "enrichment": {
      "pass": 3,
      "engine": "claude",
      "producedAt": "2026-10-05T17:00:00Z",
      "ingestedAt": "2026-10-05T13:31:57+00:00",
      "fields": [
        "agent_conduct",
        "ethics",
        "owners"
      ]
    },
    "gate": {
      "passed": true,
      "version": "1.0",
      "at": "2026-10-06T19:51:53+00:00",
      "evidence": [
        "completeness 1.00",
        "sense: Wikidata description",
        "2 live sources",
        "review by codex: pass"
      ]
    }
  },
  "metaModel": {
    "id": "THING-Q10876",
    "registryId": "vr.tr.bacteria",
    "name": "bacteria",
    "version": "0.2.0-wave.1",
    "entryKind": "thing",
    "family": "Thing Registry",
    "domain": [
      "PHY.LIV"
    ],
    "status": "research-draft"
  },
  "canonicalUrl": "https://ver.cy/models/thing/q10876/",
  "model": {
    "registry_id": "vr.tr.bacteria",
    "name": "bacteria",
    "purpose": "Let an agent handle bacteria by taxon, habitat, role, health relevance and uses, without diagnosis or personal medical advice.",
    "definition": "Single-celled prokaryotic microorganisms without a nucleus, found in soil, water, air and on and in other organisms; most are harmless or beneficial, some cause disease, and many are used in food, industry and research.",
    "what_it_is_for": "A subject of biology, health, food, environment and biotechnology.",
    "affordances": [
      "classify bacteria by taxonomy and shape",
      "explain beneficial and harmful roles",
      "find public health and hygiene guidance",
      "understand antibiotic resistance"
    ],
    "distinguishing_features": [
      "Prokaryotic cells",
      "Everywhere on Earth",
      "Mostly harmless or useful",
      "Some are pathogens"
    ],
    "appearance": "Microscopic rods, spheres or spirals, seen under the microscope or as colonies on plates.",
    "visual_identification": [
      "Shapes such as cocci, bacilli, spirilla",
      "Gram-positive or Gram-negative staining",
      "Archaea are a separate domain"
    ],
    "physical_properties": [
      {
        "quantity": "typical size",
        "typical_range": "about 0.5-5",
        "unit": "micrometres",
        "note": ""
      }
    ],
    "families_and_kinds": [
      "soil and environmental bacteria",
      "gut and skin microbiota",
      "pathogenic bacteria",
      "industrial and food bacteria",
      "photosynthetic bacteria"
    ],
    "related_models": [
      {
        "relation": "is a kind of",
        "target": "microorganism",
        "why": "category"
      },
      {
        "relation": "is treated with",
        "target": "antibiotic",
        "why": "therapy"
      },
      {
        "relation": "is part of",
        "target": "microbiome",
        "why": "community"
      },
      {
        "relation": "is contrasted with",
        "target": "virus and archaea",
        "why": "other microbes"
      }
    ],
    "identifiers": [
      {
        "scheme": "NCBI Taxonomy ID",
        "value_or_pattern": "numeric",
        "note": "taxonomy"
      },
      {
        "scheme": "LPSN name",
        "value_or_pattern": "validly published names",
        "note": "nomenclature"
      }
    ],
    "standards_and_regulation": [
      "International Code of Nomenclature of Prokaryotes",
      "Biosafety rules for laboratories",
      "Food hygiene law"
    ],
    "failure_modes_and_hazards": [
      "Agents diagnosing infections",
      "Antibiotic misuse and resistance",
      "Laboratory biosafety detail beyond general information"
    ],
    "in_scope": [],
    "out_of_scope": [],
    "characteristics": [],
    "agent_conduct": {
      "may": [
        "Identify and report bacteria from laboratory data, citing the method used.",
        "Explain the roles of bacteria in health, soil and food, citing sources."
      ],
      "must_not": [
        "Help anyone obtain, grow or spread bacteria in order to harm people, animals or crops.",
        "Advise antibiotic treatment or dosing for a person or animal.",
        "Present a laboratory identification as a clinical diagnosis.",
        "Handle or dispose of bacterial cultures outside the containment rules for the organism."
      ],
      "requires_human": [
        "Any decision on treating a bacterial infection.",
        "Reporting a notifiable infection to public health authorities."
      ]
    },
    "ethics": {
      "considerations": [
        "Most bacteria are harmless or needed for life, but a few cause deadly disease.",
        "Overuse of antibiotics drives resistance that threatens everyone's future care."
      ],
      "affected_parties": [
        "Patients and their contacts",
        "Laboratory workers",
        "The wider public"
      ]
    },
    "owners": {
      "steward": "Nobody: wild organisms; laboratories and biosafety regulators answer for cultures held.",
      "master_systems": [
        "Microbial strain collections and taxonomy databases"
      ]
    }
  },
  "sources": [
    {
      "id": "wikidata",
      "title": "Wikidata item Q10876: Bacteria",
      "url": "https://www.wikidata.org/wiki/Q10876",
      "url_status": "live",
      "what_it_supports": "identity and sense of the item",
      "checked_by": "wikidata-api"
    },
    {
      "id": "wikipedia-en",
      "title": "Wikipedia: Bacteria",
      "url": "https://en.wikipedia.org/wiki/Bacteria",
      "url_status": "live",
      "what_it_supports": "general description of the item",
      "checked_by": "wikidata-api sitelink"
    }
  ],
  "structure": {
    "bundles": [
      {
        "id": "classification",
        "name": "Classification",
        "description": "Which bacterium.",
        "rationale": "Taxonomy identifies.",
        "layers": [
          {
            "id": "taxon",
            "name": "Taxon",
            "description": "Name.",
            "findings": [
              {
                "id": "taxon-finding",
                "name": "Taxon",
                "description": "Taxon.",
                "questions": [
                  {
                    "text": "Which bacterium is meant, and what is its current valid name?",
                    "kind": "provenance"
                  },
                  {
                    "text": "Is it Gram-positive or Gram-negative?",
                    "kind": "definition"
                  }
                ]
              }
            ]
          },
          {
            "id": "habitat",
            "name": "Habitat",
            "description": "Where found.",
            "findings": [
              {
                "id": "habitat-finding",
                "name": "Habitat",
                "description": "Habitat.",
                "questions": [
                  {
                    "text": "Where does it live, according to reliable sources?",
                    "kind": "provenance"
                  },
                  {
                    "text": "Is it part of the normal microbiota?",
                    "kind": "definition"
                  }
                ]
              }
            ]
          }
        ]
      },
      {
        "id": "health",
        "name": "Health",
        "description": "Infections.",
        "rationale": "Clinicians diagnose.",
        "layers": [
          {
            "id": "symptoms",
            "name": "Symptoms",
            "description": "Seeking care.",
            "findings": [
              {
                "id": "symptoms-finding",
                "name": "Symptoms",
                "description": "Seeking care.",
                "questions": [
                  {
                    "text": "Are symptoms severe or worsening, needing urgent care?",
                    "kind": "boundary"
                  },
                  {
                    "text": "Which service should be contacted?",
                    "kind": "action"
                  }
                ]
              }
            ]
          },
          {
            "id": "antibiotics",
            "name": "Antibiotics",
            "description": "Resistance.",
            "findings": [
              {
                "id": "antibiotics-finding",
                "name": "Antibiotics",
                "description": "Antibiotic use.",
                "questions": [
                  {
                    "text": "Why should antibiotics only be taken as prescribed?",
                    "kind": "provenance"
                  },
                  {
                    "text": "What do health authorities say about resistance?",
                    "kind": "provenance"
                  }
                ]
              }
            ]
          }
        ]
      },
      {
        "id": "hygiene",
        "name": "Hygiene",
        "description": "Prevention.",
        "rationale": "Hygiene prevents spread.",
        "layers": [
          {
            "id": "food",
            "name": "Food",
            "description": "Food safety.",
            "findings": [
              {
                "id": "food-finding",
                "name": "Food",
                "description": "Food safety.",
                "questions": [
                  {
                    "text": "How can bacterial food poisoning be prevented, according to food safety guidance?",
                    "kind": "provenance"
                  },
                  {
                    "text": "Which temperatures are safe?",
                    "kind": "measurement"
                  }
                ]
              }
            ]
          },
          {
            "id": "handwashing",
            "name": "Handwashing",
            "description": "Everyday hygiene.",
            "findings": [
              {
                "id": "handwashing-finding",
                "name": "Handwashing",
                "description": "Hand hygiene.",
                "questions": [
                  {
                    "text": "What hand hygiene do health authorities recommend?",
                    "kind": "provenance"
                  },
                  {
                    "text": "When is it most important?",
                    "kind": "definition"
                  }
                ]
              }
            ]
          }
        ]
      },
      {
        "id": "uses",
        "name": "Uses",
        "description": "Beneficial bacteria.",
        "rationale": "Bacteria are useful.",
        "layers": [
          {
            "id": "food-uses",
            "name": "Food uses",
            "description": "Fermentation.",
            "findings": [
              {
                "id": "food-uses-finding",
                "name": "Food uses",
                "description": "Fermentation.",
                "questions": [
                  {
                    "text": "Which bacteria are used to make yoghurt, cheese or sauerkraut?",
                    "kind": "provenance"
                  },
                  {
                    "text": "How does fermentation work?",
                    "kind": "definition"
                  }
                ]
              }
            ]
          },
          {
            "id": "biotech",
            "name": "Biotechnology",
            "description": "Industry.",
            "findings": [
              {
                "id": "biotech-finding",
                "name": "Biotechnology",
                "description": "Biotechnology.",
                "questions": [
                  {
                    "text": "How are bacteria used in biotechnology or wastewater treatment?",
                    "kind": "definition"
                  },
                  {
                    "text": "What regulation applies?",
                    "kind": "provenance"
                  }
                ]
              }
            ]
          }
        ]
      }
    ]
  },
  "openQuestions": [
    "Should bacterial groups be separate entries?",
    "How should taxonomy databases be linked?",
    "How should resistance data be sourced?"
  ],
  "statistics": {
    "bundles": 4,
    "layers": 8,
    "findings": 8,
    "questions": 16
  }
}