{ "vercy": "1.0-draft", "publication": { "status": "research-draft", "adjudicationStatus": "unreviewed", "publishableCanonical": false, "generatedAt": "2026-09-11T06:07:00Z", "providers": [ "Claude" ], "breadth": "written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify", "pass": 2, "wave": 1, "engine": "claude", "enrichment": { "pass": 3, "engine": "claude", "producedAt": "2026-10-05T16:30:00Z", "ingestedAt": "2026-10-05T13:22:17+00:00", "fields": [ "agent_conduct", "ethics", "owners" ] }, "gate": { "passed": true, "version": "1.0", "at": "2026-10-07T10:10:25+00:00", "evidence": [ "completeness 1.00", "sense: Wikidata description", "2 live sources", "review by codex: pass" ] } }, "metaModel": { "id": "THING-Q11053", "registryId": "vr.tr.ribonucleic-acid", "name": "ribonucleic acid", "version": "0.2.0-wave.1", "entryKind": "thing", "family": "Thing Registry", "domain": [ "PHY.MAT" ], "status": "research-draft" }, "canonicalUrl": "https://ver.cy/models/thing/q11053/", "model": { "registry_id": "vr.tr.ribonucleic-acid", "name": "ribonucleic acid", "purpose": "Let an agent handle RNA by type, sequence, function and applications, including mRNA vaccines, with accurate and non-sensational information.", "definition": "Ribonucleic acid, a nucleic acid polymer of ribonucleotides that carries genetic information from DNA to protein synthesis (mRNA), forms ribosomes (rRNA), transfers amino acids (tRNA) and regulates genes; some viruses use RNA genomes.", "what_it_is_for": "RNA is central to how cells make proteins; it is also used in medicine and research.", "affordances": [ "sequence and quantify it", "study its functions", "use it in therapies and vaccines", "detect viral RNA in diagnostics" ], "distinguishing_features": [ "Single-stranded nucleic acid with ribose and uracil", "Many types and functions", "Less stable than DNA", "Some viruses have RNA genomes" ], "appearance": "Invisible; shown as sequences, structures and gel bands.", "visual_identification": [ "Sequences with uracil (U) instead of thymine", "Types such as mRNA, tRNA, rRNA", "PCR tests detect viral RNA" ], "physical_properties": [ { "quantity": "Molecular length", "unit": "nucleotides", "typical_range": "", "note": "Determine the number of nucleotide residues from the sequence or estimate it using calibrated electrophoresis." }, { "quantity": "Molar mass", "unit": "g/mol", "typical_range": "", "note": "Calculate molar mass from the nucleotide sequence while accounting for terminal groups and chemical modifications." }, { "quantity": "Hydrodynamic radius", "unit": "nm", "typical_range": "", "note": "Determine the effective radius in solution from diffusion measurements under specified temperature and buffer conditions." } ], "families_and_kinds": [ "messenger RNA", "ribosomal RNA", "transfer RNA", "regulatory RNAs such as microRNA", "viral RNA genomes" ], "related_models": [ { "relation": "is related to", "target": "DNA", "why": "nucleic acids" }, { "relation": "is translated into", "target": "protein", "why": "gene expression" }, { "relation": "is used in", "target": "vaccine", "why": "mRNA vaccines" }, { "relation": "is found in", "target": "cell", "why": "location" } ], "identifiers": [ { "scheme": "RNAcentral id", "value_or_pattern": "URS plus hex", "note": "non-coding RNA" }, { "scheme": "RefSeq accession", "value_or_pattern": "NM_ or NR_ plus digits", "note": "transcripts" } ], "standards_and_regulation": [ "Medicines regulation for RNA therapies", "Biosafety rules for RNA work", "Diagnostic test regulation" ], "failure_modes_and_hazards": [ "Misinformation about mRNA vaccines", "Sample degradation in diagnostics", "Over-interpreting test cycle thresholds" ], "in_scope": [], "out_of_scope": [], "characteristics": [], "agent_conduct": { "may": [ "Explain RNA's structure and roles from scientific sources.", "Analyse RNA sequence data the agent is authorized to use." ], "must_not": [ "Help design pathogens or enhance their harm.", "Present unproven RNA-based treatments as cures.", "Disclose genetic data of identifiable people without consent.", "Spread misinformation about mRNA vaccines." ], "requires_human": [ "Work with RNA data from identifiable people." ] }, "ethics": { "considerations": [ "RNA science underpins vaccines and treatments.", "Misinformation about it costs lives." ], "affected_parties": [ "Patients", "Research participants", "The public" ] }, "owners": { "steward": "Nobody owns the molecule; researchers and biobanks hold data and samples.", "master_systems": [ "Sequence databases" ] } }, "sources": [ { "id": "wikidata", "title": "Wikidata item Q11053: ribonucleic acid", "url": "https://www.wikidata.org/wiki/Q11053", "url_status": "live", "what_it_supports": "identity and sense of the item", "checked_by": "wikidata-api" }, { "id": "wikipedia-en", "title": "Wikipedia: RNA", "url": "https://en.wikipedia.org/wiki/RNA", "url_status": "live", "what_it_supports": "general description of the item", "checked_by": "wikidata-api sitelink" } ], "structure": { "bundles": [ { "id": "type", "name": "Type", "description": "Which RNA.", "rationale": "Type decides function.", "layers": [ { "id": "kind", "name": "Kind", "description": "mRNA, tRNA, rRNA.", "findings": [ { "id": "kind-finding", "name": "Kind", "description": "RNA type.", "questions": [ { "text": "Which type of RNA is it?", "kind": "definition" }, { "text": "What does it do?", "kind": "definition" } ] } ] }, { "id": "sequence", "name": "Sequence", "description": "Identity.", "findings": [ { "id": "sequence-finding", "name": "Sequence", "description": "Sequence and accession.", "questions": [ { "text": "What is its sequence or accession?", "kind": "provenance" }, { "text": "Which gene or organism?", "kind": "definition" } ] } ] } ] }, { "id": "function", "name": "Function", "description": "Role in cells.", "rationale": "Function is central.", "layers": [ { "id": "expression", "name": "Expression", "description": "Gene expression.", "findings": [ { "id": "expression-finding", "name": "Expression", "description": "Role in expression.", "questions": [ { "text": "How does it contribute to gene expression?", "kind": "definition" }, { "text": "How is it regulated?", "kind": "definition" } ] } ] }, { "id": "viruses", "name": "Viruses", "description": "RNA genomes.", "findings": [ { "id": "viruses-finding", "name": "Viruses", "description": "Viral RNA.", "questions": [ { "text": "Is it part of a viral genome?", "kind": "definition" }, { "text": "How is it detected in tests?", "kind": "definition" } ] } ] } ] }, { "id": "applications", "name": "Applications", "description": "Medicine and research.", "rationale": "Applications need accurate information.", "layers": [ { "id": "vaccines", "name": "Vaccines", "description": "mRNA vaccines.", "findings": [ { "id": "vaccines-finding", "name": "Vaccines", "description": "mRNA vaccine facts.", "questions": [ { "text": "How do mRNA vaccines work, according to health authorities?", "kind": "provenance" }, { "text": "Which claims are misinformation?", "kind": "boundary" } ] } ] }, { "id": "therapies", "name": "Therapies", "description": "RNA drugs.", "findings": [ { "id": "therapies-finding", "name": "Therapies", "description": "RNA therapies.", "questions": [ { "text": "Which RNA therapies are approved?", "kind": "provenance" }, { "text": "For what conditions?", "kind": "definition" } ] } ] } ] }, { "id": "laboratory", "name": "Laboratory", "description": "Handling and testing.", "rationale": "RNA is fragile.", "layers": [ { "id": "handling", "name": "Handling", "description": "Degradation.", "findings": [ { "id": "handling-finding", "name": "Handling", "description": "Handling needs.", "questions": [ { "text": "How should RNA samples be handled to avoid degradation?", "kind": "action" }, { "text": "At what temperature are they stored?", "kind": "measurement" } ] } ] }, { "id": "testing", "name": "Testing", "description": "Diagnostics.", "findings": [ { "id": "testing-finding", "name": "Testing", "description": "Test interpretation.", "questions": [ { "text": "How should an RNA test result be interpreted?", "kind": "boundary" }, { "text": "When should a clinician be consulted?", "kind": "action" } ] } ] } ] } ] }, "openQuestions": [ "Should RNA types be separate entries?", "How should transcripts be linked to genes?", "How should agents address vaccine misinformation calmly?" ], "statistics": { "bundles": 4, "layers": 8, "findings": 8, "questions": 16 } }