{ "vercy": "1.0-draft", "publication": { "status": "research-draft", "adjudicationStatus": "unreviewed", "publishableCanonical": false, "generatedAt": "2026-09-11T04:26:33Z", "providers": [ "Claude" ], "breadth": "written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify", "pass": 2, "wave": 1, "engine": "claude" }, "metaModel": { "id": "THING-Q18123741", "registryId": "vr.tr.infectious-disease", "name": "infectious disease", "version": "0.2.0-wave.1", "entryKind": "thing", "family": "Thing Registry", "domain": [ "XCT.STA" ], "status": "research-draft" }, "canonicalUrl": "https://ver.cy/models/thing/q18123741/", "model": { "registry_id": "vr.tr.infectious-disease", "name": "infectious disease", "purpose": "Let an agent reason about infectious diseases through pathogen, transmission, case definition and notification duties, and never offer diagnosis or treatment decisions.", "definition": "A disease caused by a pathogen, a bacterium, virus, fungus, parasite or prion, that can be transmitted from one host to another directly or through a vector or the environment.", "what_it_is_for": "Organising knowledge about diseases whose spread between hosts makes them a public health matter as well as a personal one.", "affordances": [ "diagnose it, which only qualified professionals may do", "notify it, where law makes it a notifiable disease", "prevent it, by vaccination, hygiene, vector control and treatment", "track it, through surveillance and case counts" ], "distinguishing_features": [ "Caused by a pathogen and transmissible, unlike non-communicable diseases", "Carries public health duties such as notification and isolation", "Defined for surveillance by case definitions that differ from clinical diagnosis", "Can be zoonotic, passing between animals and humans" ], "appearance": "No single appearance: signs vary with the pathogen; many infections are asymptomatic. Laboratory tests, not appearance, confirm them.", "visual_identification": [ "Symptoms suggest but do not establish an infection", "Confirmation needs a laboratory test or a clinical case definition", "Outbreaks are recognised by case clustering in time and place" ], "physical_properties": [ { "quantity": "incubation period", "typical_range": "hours to years", "unit": "time", "note": "varies widely by pathogen" }, { "quantity": "basic reproduction number R0", "typical_range": "0.5-18", "unit": "secondary cases", "note": "measles is at the high end" } ], "families_and_kinds": [ "by pathogen: bacterial, viral, fungal, parasitic, prion", "by route: airborne, droplet, contact, faecal-oral, vector-borne, bloodborne, sexual", "by host range: human only, zoonotic", "by status: endemic, epidemic, pandemic, eliminated, eradicated" ], "related_models": [ { "relation": "is a kind of", "target": "disease", "why": "inherits classification, diagnosis and treatment questions" }, { "relation": "is caused by", "target": "pathogen", "why": "the organism or agent is a separate model" }, { "relation": "is spread by", "target": "vector", "why": "insects and other vectors are separate models" }, { "relation": "is prevented by", "target": "vaccine", "why": "vaccines are separate models with their own regulation" } ], "identifiers": [ { "scheme": "ICD-11 code", "value_or_pattern": "chapter 1 codes such as 1A00", "note": "WHO classification of diseases" }, { "scheme": "SNOMED CT concept", "value_or_pattern": "numeric concept id", "note": "clinical terminology" } ], "standards_and_regulation": [ "International Health Regulations (2005)", "National notifiable disease lists and reporting rules", "WHO ICD-11 classification" ], "failure_modes_and_hazards": [ "Presenting an agent answer as a diagnosis or a treatment decision", "Mixing clinical diagnosis and surveillance case definitions", "Stigmatising language or disclosure of an individual health status", "Out-of-date guidance during a fast-moving outbreak" ], "in_scope": [], "out_of_scope": [], "characteristics": [] }, "sources": [ { "id": "wikidata", "title": "Wikidata item Q18123741: infectious disease", "url": "https://www.wikidata.org/wiki/Q18123741", "url_status": "live", "what_it_supports": "identity and sense of the item", "checked_by": "wikidata-api" }, { "id": "wikipedia-en", "title": "Wikipedia: Infectious disease", "url": "https://en.wikipedia.org/wiki/Infectious_disease", "url_status": "live", "what_it_supports": "general description of the item", "checked_by": "wikidata-api sitelink" } ], "structure": { "bundles": [ { "id": "pathogen-and-transmission", "name": "Pathogen and transmission", "description": "What causes it and how it spreads.", "rationale": "Every intervention against an infectious disease depends on knowing the pathogen and the route.", "layers": [ { "id": "pathogen", "name": "Pathogen", "description": "The causative agent.", "findings": [ { "id": "pathogen-finding", "name": "Causative agent", "description": "The pathogen and its classification.", "questions": [ { "text": "Which pathogen causes this disease?", "kind": "definition" }, { "text": "Are there strains or variants that behave differently?", "kind": "boundary" } ] } ] }, { "id": "route", "name": "Transmission route", "description": "How it passes between hosts.", "findings": [ { "id": "route-finding", "name": "Routes and reservoirs", "description": "The routes of transmission and animal reservoirs.", "questions": [ { "text": "By which routes is it transmitted?", "kind": "definition" }, { "text": "Is there an animal reservoir or vector?", "kind": "definition" } ] } ] } ] }, { "id": "case-definition", "name": "Case definition and diagnosis", "description": "How a case is recognised.", "rationale": "Surveillance counts cases by definitions that differ from bedside diagnosis; the two must stay separate.", "layers": [ { "id": "definition", "name": "Case definition", "description": "Criteria for counting a case.", "findings": [ { "id": "definition-finding", "name": "Surveillance definition", "description": "The confirmed, probable and suspected criteria.", "questions": [ { "text": "What is the case definition used for surveillance, and by whom?", "kind": "provenance" }, { "text": "How does it differ from clinical diagnosis?", "kind": "boundary" } ] } ] }, { "id": "testing", "name": "Testing", "description": "Laboratory confirmation.", "findings": [ { "id": "testing-finding", "name": "Test methods", "description": "The tests used and their accuracy.", "questions": [ { "text": "Which tests confirm this infection, and how accurate are they?", "kind": "measurement" }, { "text": "What must an agent refer to a clinician rather than answer?", "kind": "action" } ] } ] } ] }, { "id": "prevention-and-control", "name": "Prevention and control", "description": "Stopping spread.", "rationale": "Control measures are specific to the pathogen and route; generic advice is often wrong.", "layers": [ { "id": "prevention", "name": "Prevention", "description": "Vaccines, hygiene and vector control.", "findings": [ { "id": "prevention-finding", "name": "Preventive measures", "description": "The measures that reduce transmission.", "questions": [ { "text": "Which preventive measures work against this disease?", "kind": "definition" }, { "text": "Is a vaccine available, and for whom is it recommended?", "kind": "definition" } ] } ] }, { "id": "control", "name": "Outbreak control", "description": "Isolation, tracing and treatment.", "findings": [ { "id": "control-finding", "name": "Control measures", "description": "The measures used once cases occur.", "questions": [ { "text": "What control measures apply once cases occur?", "kind": "action" }, { "text": "Who has authority to impose them?", "kind": "provenance" } ] } ] } ] }, { "id": "surveillance-and-duty", "name": "Surveillance and duties", "description": "Tracking and legal obligations.", "rationale": "Notifiable status creates legal duties and privacy constraints that an agent must respect.", "layers": [ { "id": "surveillance", "name": "Surveillance", "description": "Counts and trends.", "findings": [ { "id": "surveillance-finding", "name": "Surveillance data", "description": "The case counts and their source.", "questions": [ { "text": "What do current surveillance data show, and from which source?", "kind": "measurement" }, { "text": "How complete is reporting?", "kind": "measurement" } ] } ] }, { "id": "duties", "name": "Notification and privacy", "description": "Legal duties and limits.", "findings": [ { "id": "duties-finding", "name": "Duties and privacy", "description": "Notification duties and constraints on disclosure.", "questions": [ { "text": "Is this disease notifiable here, and who must notify?", "kind": "provenance" }, { "text": "What information about individuals must not be disclosed?", "kind": "boundary" } ] } ] } ] } ] }, "openQuestions": [ "Should each infectious disease link to its pathogen as a required relation?", "How should the registry mark guidance that changes during an outbreak?", "Which notification duties should the model carry per jurisdiction?" ], "statistics": { "bundles": 4, "layers": 8, "findings": 8, "questions": 16 } }