{ "vercy": "1.0-draft", "publication": { "status": "research-draft", "adjudicationStatus": "unreviewed", "publishableCanonical": false, "generatedAt": "2026-09-12T09:57:40Z", "providers": [ "Codex" ], "breadth": "recalled by Codex without web access - no source was read", "missingProviders": [], "pass": 2, "cost": { "grok": { "seconds": 20.2, "error": "Reading additional input from stdin...\nOpenAI Codex v0.153.4\n--------\nworkdir: R:\\02_PROJECTS\\02_Meta_Models_Platforms\\Ver.cy\\current\\thing-registry-backlog\nmodel: gpt-6-astra\nprovider: openai\napproval: never\nsandbox: read-only\nreasoning effort: none\nreasoning summaries: none\nsession id: 01a0950c-0565-7b52-88da-28577e9f6b3a\n--------\nuser\nDescribe what is already known about one registered thing. Answer as JSON only, no prose around it.\n\nThing: gemma\nSense to describe: (none recorded)\nDomain code: PHY.LIV\nAlso known as: (none)\n\n\nContext for this batch of 1001 things:\n# Batch 043: 1001 registere", "usd": 0.0, "recall": true }, "codex": { "seconds": 72.8, "error": "Reading additional input from stdin...\nOpenAI Codex v0.153.4\n--------\nworkdir: R:\\02_PROJECTS\\02_Meta_Models_Platforms\\Ver.cy\\current\\thing-registry-backlog\nmodel: gpt-6-astra\nprovider: openai\napproval: never\nsandbox: read-only\nreasoning effort: none\nreasoning summaries: none\nsession id: 01a0950c-055e-7a62-8813-1fa2b3799cfe\n--------\nuser\nYou are drafting a Vercy meta-model for one registered thing. Answer as JSON only, no prose around it.\n\nThing: gemma\nRegistry id: vr.tr.gemma\nPlane / domain: PHY / PHY.LIV\nRegistry definition: (none recorded)\nNames folded into this entry: (none)\n\n\nContext for " } }, "enrichment": { "pass": 3, "engine": "claude", "producedAt": "2026-10-06T12:00:00Z", "ingestedAt": "2026-10-06T09:00:04+00:00", "fields": [ "agent_conduct", "ethics", "owners" ] }, "gate": { "passed": true, "version": "1.0", "at": "2026-10-09T07:30:01+00:00", "evidence": [ "completeness 1.00", "sense: Wikidata description", "2 live sources", "review by codex: pass" ] } }, "metaModel": { "id": "THING-Q2746099", "registryId": "vr.tr.gemma", "name": "gemma", "version": "0.1.0-research.1", "entryKind": "thing", "family": "Thing Registry", "domain": [ "PHY.LIV" ], "status": "research-draft" }, "canonicalUrl": "https://ver.cy/models/thing/q2746099/", "model": { "registry_id": "vr.tr.gemma", "name": "gemma", "purpose": "Enable an agent to recognise a gemma as an asexual reproductive propagule, assess its developmental condition, and choose suitable observation, propagation or containment actions.", "definition": "In its botanical sense, a gemma is a small vegetative propagule that separates from its parent and can develop into a new individual without fertilization, notably in liverworts and mosses.", "scope_statement": "Provisionally interpret vr.tr.gemma as the botanical reproductive structure: an individual gemma or explicitly identified cohort, from formation on its parent through release and establishment. This interpretation follows the vegetative brood-body sense documented by the [Missouri Botanical Garden](https://www.mobot.org/mobot/latindict/keyDetail.aspx?keyWord=gemma); the registry's intended sense still needs confirmation.", "in_scope": [ "Recognition of a specialised vegetative propagule in the context of its producer taxon", "Gemma morphology, formation site and attachment to the parent", "Maturation, detachment, dispersal and establishment", "Observed integrity, viability and response to propagation conditions", "Parentage and cohort tracking without equating propagule count with genetic diversity" ], "out_of_scope": [ "The bivalve genus Gemma and its member species", "Gemma software models, personal names and gemstones", "Whole-organism taxonomy, native range and conservation assessments except as linked parent-taxon context", "Sexual reproductive structures and seed or spore models beyond identification boundaries", "Detailed anatomy of gemma cups and other supporting parent organs", "General cultivation or ecosystem management beyond actions directly involving gemmae" ], "distinguishing_features": [ "Identify a specialised body serving vegetative reproduction; small size or a budlike appearance alone is insufficient.", "Distinguish the propagule from the cup, stalk or other parent structure that bears it.", "Use developmental origin to distinguish it from seeds and reproductive spores; shape alone may be ambiguous.", "Distinguish a regularly produced gemma from an accidentally detached fragment that happens to regenerate.", "Apply producer-specific terminology: neither a cup nor the disc shape familiar from some liverworts is a universal requirement." ], "characteristics": [ { "name": "Producer identity", "kind": "relation", "unit_or_values": "Linked parent specimen and taxon, identification evidence and confidence", "why_it_matters": "Determines which structural criteria and propagation conditions are applicable." }, { "name": "Formation site", "kind": "category", "unit_or_values": "Cup, leaf, thallus, specialised stalk, other documented site, unknown", "why_it_matters": "Supports identification and distinguishes the gemma from its supporting organ." }, { "name": "Morphology", "kind": "category", "unit_or_values": "Observed shape, cellular organisation and diagnostic features under a stated imaging method", "why_it_matters": "Allows comparison with producer-specific descriptions without imposing a universal gemma form." }, { "name": "Dimensions", "kind": "measurement", "unit_or_values": "Length, width and thickness in µm or mm, with hydration state and measurement method", "why_it_matters": "Supports recognition and maturation comparisons while making measurement conditions explicit." }, { "name": "Developmental condition", "kind": "state", "unit_or_values": "Forming, mature, initiating growth, established successor, indeterminate", "why_it_matters": "Separates propagule development from the transition to an independently growing organism." }, { "name": "Attachment condition", "kind": "state", "unit_or_values": "Attached, naturally detached, deliberately removed, unknown", "why_it_matters": "Changes dispersal potential and the interpretation of handling damage." }, { "name": "Viability evidence", "kind": "state", "unit_or_values": "Untested, growth demonstrated, assay-supported viable, assay-supported nonviable, inconclusive", "why_it_matters": "Prevents appearance or one failed growth attempt from being treated as definitive viability evidence." }, { "name": "Establishment outcome", "kind": "measurement", "unit_or_values": "Number established / number tested and percentage, with conditions, endpoint and observation period", "why_it_matters": "Makes propagation results comparable and separates initial growth from successful establishment." } ], "affordances": [ "Identify and image candidate gemmae while retaining parent and formation-site context.", "Count and measure gemmae using an explicit individual or cohort sampling unit.", "Collect mature propagules with a producer-appropriate method and record detachment damage.", "Test viability and establishment under documented substrate, moisture, light and temperature conditions.", "Trace propagated descendants to the parent specimen and collection cohort.", "Contain or dispose of unwanted propagules using procedures validated for the producer and setting." ], "agent_conduct": { "may": [ "Identify gemmae and gemma cups in bryophyte specimens and describe their role in propagation.", "Culture or propagate bryophytes from gemmae for lawful research, teaching or conservation." ], "must_not": [ "Collect bryophyte material from protected sites or species without a permit.", "Move propagules between regions where they could establish as invasive populations.", "Confuse the botanical sense with the gemstone or bud senses of the word in records.", "Strip a wild population to obtain propagation material." ], "requires_human": [ "Collecting from protected sites or species.", "Releasing cultured material into the wild." ] }, "ethics": { "considerations": [ "Bryophyte populations are small and slow to recover from over-collection.", "Introduced propagules can establish and displace local flora." ], "affected_parties": [ "Wild bryophyte populations", "Protected habitats", "Researchers and students" ] }, "owners": { "steward": "Nobody owns wild specimens; protected area authorities and herbaria regulate collection and hold vouchers.", "master_systems": [ "Herbarium specimen databases", "Protected species collection permit records" ] }, "what_it_is_for": [ "Gemmae are encountered when studying vegetative reproduction in liverworts, mosses and other organisms that produce these propagules.", "They are used in propagation and developmental research because they can establish new individuals without fertilization." ], "standards_and_regulation": [ "ISPM 36, Integrated measures for plants for planting, issued by the International Plant Protection Convention, applies when gemmae are traded as planting material." ], "visual_identification": [ "In some liverworts, gemmae appear as small green discs inside cup-shaped structures on the parent thallus.", "In mosses, gemmae may appear as small detachable bodies on leaves, stems or specialized supporting structures.", "Microscopy may reveal an organized multicellular propagule rather than the single cell typical of a spore." ], "failure_modes_and_hazards": [ "Unintended dispersal can establish unwanted populations outside the intended growing area.", "Transferred propagules can carry associated pests or pathogens into other cultures or habitats.", "Misidentification can compromise propagation records and ecological observations." ] }, "sources": [ { "id": "wikidata", "title": "Wikidata item Q2746099: gemma", "url": "https://www.wikidata.org/wiki/Q2746099", "url_status": "live", "what_it_supports": "identity and sense of the item", "checked_by": "wikidata-api" }, { "id": "wikipedia-en", "title": "Wikipedia: Gemma (botany)", "url": "https://en.wikipedia.org/wiki/Gemma_%28botany%29", "url_status": "live", "what_it_supports": "general description of the item", "checked_by": "wikidata-api sitelink" } ], "structure": { "bundles": [ { "id": "gemma-identity", "name": "Gemma identity", "description": "Establish the intended biological sense and the evidence that a candidate is a gemma.", "rationale": "The registry has no definition, and both homonyms and neighbouring reproductive structures can cause a wrong model assignment.", "layers": [ { "id": "registry-sense", "name": "Registry sense", "description": "Resolve what the registered name denotes before applying biological criteria.", "findings": [ { "id": "propagule-sense", "name": "Propagule sense", "description": "Treat the botanical interpretation as provisional until the registry's originating record is checked.", "questions": [ { "text": "Does the originating registry record identify a vegetative reproductive body or the bivalve genus Gemma?", "kind": "definition", "id": "propagule-sense-q01" }, { "text": "Which source identifier or original definition supports the selected sense?", "kind": "provenance", "id": "propagule-sense-q02" } ] } ] }, { "id": "reproductive-boundaries", "name": "Reproductive boundaries", "description": "Distinguish gemmae from visually similar bodies using producer-specific developmental evidence.", "findings": [ { "id": "specialised-propagule", "name": "Specialised propagule", "description": "Record why the structure is identified as a gemma rather than relying on size, shape or regeneration alone.", "questions": [ { "text": "What developmental or anatomical evidence identifies this body as a specialised vegetative propagule?", "kind": "definition", "id": "specialised-propagule-q01" }, { "text": "What distinguishes it here from a spore, ordinary bud, bulbil or accidental regenerating fragment?", "kind": "boundary", "id": "specialised-propagule-q02" } ] } ] } ] }, { "id": "parent-and-formation", "name": "Parent and formation", "description": "Connect gemmae to the organisms and structures that produce them.", "rationale": "Producer identity and formation site determine how observations should be interpreted.", "layers": [ { "id": "producer-link", "name": "Producer link", "description": "Maintain taxonomic and specimen context without treating the gemma as a taxon.", "findings": [ { "id": "parent-attribution", "name": "Parent attribution", "description": "Link a gemma to its observed parent or explicitly record uncertainty for detached material.", "questions": [ { "text": "Which parent specimen and taxon produced this gemma, and how was that attribution established?", "kind": "provenance", "id": "parent-attribution-q01" }, { "text": "For detached material, what evidence supports parent attribution and what alternatives remain?", "kind": "boundary", "id": "parent-attribution-q02" } ] } ] }, { "id": "formation-architecture", "name": "Formation architecture", "description": "Describe the propagule's position and attachment separately from its supporting structure.", "findings": [ { "id": "bearing-site", "name": "Bearing site", "description": "Record where gemmae develop without assuming that every producer forms gemma cups.", "questions": [ { "text": "On which parent organ or specialised structure does the gemma form, and how is it attached?", "kind": "definition", "id": "bearing-site-q01" }, { "text": "Which visible tissue belongs to the gemma and which belongs to its cup, stalk or parent surface?", "kind": "boundary", "id": "bearing-site-q02" } ] } ] } ] }, { "id": "morphology-and-readiness", "name": "Morphology and readiness", "description": "Record physical features and evidence of maturation or damage.", "rationale": "Recognition and collection decisions need observable criteria specific to the producer.", "layers": [ { "id": "diagnostic-form", "name": "Diagnostic form", "description": "Capture dimensions and structural features under comparable observation conditions.", "findings": [ { "id": "form-record", "name": "Form record", "description": "Describe the actual gemma rather than importing a familiar liverwort example.", "questions": [ { "text": "What are its dimensions, shape and visible cellular organisation at the recorded hydration state?", "kind": "measurement", "id": "form-record-q01" }, { "text": "Which features match a documented gemma description for the identified producer?", "kind": "provenance", "id": "form-record-q02" } ] } ] }, { "id": "maturation-and-integrity", "name": "Maturation and integrity", "description": "Separate readiness for release from physical condition and demonstrated viability.", "findings": [ { "id": "collection-readiness", "name": "Collection readiness", "description": "Use observed development and integrity to decide whether collection is appropriate.", "questions": [ { "text": "Which producer-specific signs indicate that this gemma is mature enough for collection or natural release?", "kind": "action", "id": "collection-readiness-q01" }, { "text": "What damage, collapse or contamination is visible, and how was it assessed?", "kind": "measurement", "id": "collection-readiness-q02" } ] } ] } ] }, { "id": "release-and-establishment", "name": "Release and establishment", "description": "Follow the transition from attached propagule to dispersed body and independently growing successor.", "rationale": "Detachment, transport and successful establishment are separate events with different evidence requirements.", "layers": [ { "id": "detachment-and-transport", "name": "Detachment and transport", "description": "Record how gemmae leave their parent and reach a receiving surface.", "findings": [ { "id": "release-pathway", "name": "Release pathway", "description": "Distinguish observed natural release from deliberate removal and inferred dispersal.", "questions": [ { "text": "Was detachment observed, induced by handling or inferred from the collection location?", "kind": "provenance", "id": "release-pathway-q01" }, { "text": "What transport mechanism and movement distance were demonstrated for this producer and setting?", "kind": "measurement", "id": "release-pathway-q02" } ] } ] }, { "id": "growth-transition", "name": "Growth transition", "description": "Define and observe the endpoint at which a gemma establishes a growing successor.", "findings": [ { "id": "establishment-evidence", "name": "Establishment evidence", "description": "Record growth conditions and distinguish initial activity from sustained establishment.", "questions": [ { "text": "Under what substrate, moisture, light and temperature conditions did growth begin, and after how long?", "kind": "measurement", "id": "establishment-evidence-q01" }, { "text": "What observable endpoint transfers tracking from the gemma to an established organism?", "kind": "boundary", "id": "establishment-evidence-q02" } ] } ] } ] }, { "id": "propagation-and-traceability", "name": "Propagation and traceability", "description": "Support controlled handling, viability testing and attribution of propagated material.", "rationale": "An agent must preserve meaningful parentage and outcome records while avoiding unsupported assumptions about survival or genetic identity.", "layers": [ { "id": "handling-and-viability", "name": "Handling and viability", "description": "Choose handling procedures supported for the producer and assess their outcomes.", "findings": [ { "id": "validated-handling", "name": "Validated handling", "description": "Treat collection, storage and viability conclusions as dependent on a documented method.", "questions": [ { "text": "Which collection and storage procedure has evidence of retaining viability for this producer?", "kind": "action", "id": "validated-handling-q01" }, { "text": "What assay, observation period and comparison distinguish nonviability from unsuitable growth conditions?", "kind": "measurement", "id": "validated-handling-q02" } ] } ] }, { "id": "cohort-and-descendant-records", "name": "Cohort and descendant records", "description": "Track propagules and successors without confusing their number with the number of genetic lineages.", "findings": [ { "id": "lineage-and-containment", "name": "Lineage and containment", "description": "Preserve parent and cohort links through propagation and account for unwanted material.", "questions": [ { "text": "Which gemmae and descendants share a documented parent, and is genetic identity inferred or independently tested?", "kind": "provenance", "id": "lineage-and-containment-q01" }, { "text": "How will unused gemmae be contained or disposed of to prevent unintended establishment in this setting?", "kind": "action", "id": "lineage-and-containment-q02" } ] } ] } ] }, { "id": "evidence-and-external-alignment", "name": "Evidence and external alignment", "description": "What the world already says about this thing, gathered so the model can be checked against it.", "rationale": "A model that cannot be lined up against existing standards, identifiers and practice cannot be adopted by anyone who already uses them.", "layers": [ { "id": "reported-evidence", "name": "Reported evidence", "description": "Findings from the breadth pass, kept separate from the structural claims.", "findings": [ { "id": "evidence-confidence-notes", "name": "Check these first", "description": "Recalled without web access and unsourced; every item is a lead to verify.", "evidence": [ "The registry supplies no sense or identifier; the botanical interpretation is provisional and should be checked against the originating record.", "If the intended thing is the bivalve genus Gemma, this description must be replaced with a taxonomic account.", "This is recall only; no sources were consulted, and species-specific dimensions, viability and distribution are not asserted." ], "questions": [ { "id": "evidence-confidence-notes-q01", "text": "Which of these check these first hold for the sense of gemma this model covers, and on what evidence?", "kind": "provenance" } ] }, { "id": "evidence-kinds", "name": "Kinds and varieties", "description": "Recalled without web access and unsourced; every item is a lead to verify.", "evidence": [ "Liverwort gemmae borne in gemma cups", "Moss gemmae borne on leaves", "Moss gemmae borne on specialized stalks" ], "questions": [ { "id": "evidence-kinds-q01", "text": "Which of these kinds and varieties hold for the sense of gemma this model covers, and on what evidence?", "kind": "provenance" } ] }, { "id": "evidence-real-world-use", "name": "Real-world use", "description": "Recalled without web access and unsourced; every item is a lead to verify.", "evidence": [ "Vegetative propagation of bryophytes in cultivation and research", "Study of regeneration and asexual reproduction", "Bryophyte identification using gemma morphology and position" ], "questions": [ { "id": "evidence-real-world-use-q01", "text": "Which of these real-world use hold for the sense of gemma this model covers, and on what evidence?", "kind": "provenance" } ] }, { "id": "evidence-measurements", "name": "Typical measurements", "description": "Recalled without web access and unsourced; every item is a lead to verify.", "evidence": [ { "quantity": "Gemma dimensions", "typical_range": "Species-dependent; no general range asserted", "unit": "µm or mm" } ], "questions": [ { "id": "evidence-measurements-q01", "text": "Which of these typical measurements hold for the sense of gemma this model covers, and on what evidence?", "kind": "provenance" } ] }, { "id": "evidence-failure-modes-and-hazards", "name": "Failure modes and hazards", "description": "Recalled without web access and unsourced; every item is a lead to verify.", "evidence": [ "Failure to establish when moisture, light or substrate conditions are unsuitable", "Loss of viability through desiccation in susceptible species", "Unintended spread in cultivated collections through detached gemmae" ], "questions": [ { "id": "evidence-failure-modes-and-hazards-q01", "text": "Which of these failure modes and hazards hold for the sense of gemma this model covers, and on what evidence?", "kind": "provenance" } ] }, { "id": "evidence-neighbours", "name": "Neighbouring kinds and how to tell them apart", "description": "Recalled without web access and unsourced; every item is a lead to verify.", "evidence": [ { "name": "Spore", "difference": "A gemma is a vegetative propagule; a spore is a reproductive cell produced through sporogenesis." }, { "name": "Seed", "difference": "A seed develops from an ovule and contains an embryo; a gemma develops vegetatively without an ovule." }, { "name": "Gemma cup", "difference": "A gemma cup is the parent structure that contains gemmae, not the propagule itself." }, { "name": "Bud", "difference": "Bud is a broader term for an undeveloped shoot or other outgrowth; gemma here denotes a detachable reproductive propagule." }, { "name": "Gemma", "difference": "Capitalized and used taxonomically, Gemma is also a bivalve genus; that sense denotes a taxon rather than a botanical propagule." } ], "questions": [ { "id": "evidence-neighbours-q01", "text": "Which of these neighbouring kinds and how to tell them apart hold for the sense of gemma this model covers, and on what evidence?", "kind": "provenance" } ] } ] } ] } ] }, "openQuestions": [ "Does the originating record for vr.tr.gemma confirm the botanical propagule sense rather than the bivalve genus?", "Which producer groups and historical uses of 'gemma' belong within this registry entry?", "Which producer-specific characters reliably distinguish gemmae from bulbils, ordinary buds, spores and regenerating fragments?", "Which maturation, storage and viability criteria have been experimentally validated for the intended producers?", "What establishment endpoint and counting convention should apply when one gemma produces multiple growing axes or connected descendants?" ], "statistics": { "bundles": 6, "layers": 11, "findings": 16, "questions": 26 } }