{ "vercy": "1.0-draft", "publication": { "status": "research-draft", "adjudicationStatus": "unreviewed", "publishableCanonical": false, "generatedAt": "2026-09-11T08:23:30Z", "providers": [ "Claude" ], "breadth": "written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify", "pass": 2, "wave": 1, "engine": "claude", "enrichment": { "pass": 3, "engine": "claude", "producedAt": "2026-10-05T16:30:00Z", "ingestedAt": "2026-10-05T13:18:15+00:00", "fields": [ "agent_conduct", "ethics", "owners" ] }, "gate": { "passed": true, "version": "1.0", "at": "2026-10-07T10:10:32+00:00", "evidence": [ "completeness 1.00", "sense: Wikidata description", "2 live sources", "review by codex: pass" ] } }, "metaModel": { "id": "THING-Q8066", "registryId": "vr.tr.amino-acid", "name": "amino acid", "version": "0.2.0-wave.1", "entryKind": "thing", "family": "Thing Registry", "domain": [ "PHY.MAT" ], "status": "research-draft" }, "canonicalUrl": "https://ver.cy/models/thing/q8066/", "model": { "registry_id": "vr.tr.amino-acid", "name": "amino acid", "purpose": "Let an agent handle amino acids by structure, classification, biological role, nutrition and supplements, with care about health claims.", "definition": "An organic compound containing an amino group and a carboxylic acid group; about 20 proteinogenic amino acids are the building blocks of proteins, and many others have biological or industrial roles.", "what_it_is_for": "Building proteins, metabolism, signalling and nutrition.", "affordances": [ "classify amino acids", "explain protein structure", "understand essential amino acids in diet", "assess supplement claims" ], "distinguishing_features": [ "Amino plus carboxylic acid group", "Chiral (except glycine)", "Build proteins", "Some are essential in diet" ], "appearance": "White crystalline solids when pure.", "visual_identification": [ "Amino and carboxyl groups", "Three- and one-letter codes such as Val and V", "Proteinogenic and non-proteinogenic kinds" ], "physical_properties": [ { "quantity": "Molar mass", "unit": "grams per mole", "typical_range": "", "note": "Molar mass is calculated from the molecular formula, distinguishing the free amino acid from salts and hydrates." }, { "quantity": "Water solubility", "unit": "grams per liter", "typical_range": "", "note": "Water solubility is measured at a stated temperature and pH because it varies substantially with molecular structure and ionization." }, { "quantity": "Solid density", "unit": "grams per cubic centimeter", "typical_range": "", "note": "Solid density is measured for a specified crystalline form and temperature using a suitable density measurement method." } ], "families_and_kinds": [ "proteinogenic amino acids", "essential amino acids", "non-proteinogenic amino acids", "amino acid derivatives" ], "related_models": [ { "relation": "is a kind of", "target": "amine and organic acid", "why": "category" }, { "relation": "forms", "target": "protein", "why": "polymer" }, { "relation": "is linked by", "target": "peptide bond", "why": "bond" }, { "relation": "is part of", "target": "nutrition", "why": "diet" } ], "identifiers": [ { "scheme": "IUPAC codes", "value_or_pattern": "three- and one-letter codes", "note": "amino acids" }, { "scheme": "ChEBI id", "value_or_pattern": "database ids", "note": "chemical entities" } ], "standards_and_regulation": [ "IUPAC-IUBMB nomenclature", "Food supplement regulations", "Health claims rules (EU Regulation 1924/2006)" ], "failure_modes_and_hazards": [ "Unsupported supplement claims", "Metabolic disorders such as PKU needing diet control", "Excess intake from supplements" ], "in_scope": [], "out_of_scope": [], "characteristics": [], "agent_conduct": { "may": [ "Describe the structure, properties and biological roles of amino acids from reliable sources.", "Report the amino acid content of foods with their sources." ], "must_not": [ "Make health or performance claims for amino acid supplements that evidence does not support.", "Give dietary advice for a person's medical condition, such as a metabolic disorder, in place of a clinician.", "Misstate the hazards of handling amino acids or their derivatives in a laboratory." ], "requires_human": [ "Recommending supplementation to a person with a medical condition." ] }, "ethics": { "considerations": [ "Supplement marketing often overstates benefits and can mislead consumers.", "People with inherited metabolic disorders depend on accurate dietary information." ], "affected_parties": [ "Consumers of supplements", "People with metabolic disorders" ] }, "owners": { "steward": "Nobody owns the substance class; producers answer for products and food authorities regulate claims.", "master_systems": [ "Chemical substance databases" ] } }, "sources": [ { "id": "wikidata", "title": "Wikidata item Q8066: amino acid", "url": "https://www.wikidata.org/wiki/Q8066", "url_status": "live", "what_it_supports": "identity and sense of the item", "checked_by": "wikidata-api" }, { "id": "wikipedia-en", "title": "Wikipedia: Amino acid", "url": "https://en.wikipedia.org/wiki/Amino_acid", "url_status": "live", "what_it_supports": "general description of the item", "checked_by": "wikidata-api sitelink" } ], "structure": { "bundles": [ { "id": "structure", "name": "Structure", "description": "Which amino acid.", "rationale": "Side chains define them.", "layers": [ { "id": "identity", "name": "Identity", "description": "Name and code.", "findings": [ { "id": "identity-finding", "name": "Identity", "description": "Identity.", "questions": [ { "text": "Which amino acid is meant, and what is its code?", "kind": "definition" }, { "text": "What is its side chain?", "kind": "definition" } ] } ] }, { "id": "class", "name": "Class", "description": "Polarity and charge.", "findings": [ { "id": "class-finding", "name": "Class", "description": "Classification.", "questions": [ { "text": "Is it polar, nonpolar, acidic or basic?", "kind": "definition" }, { "text": "Is it essential?", "kind": "definition" } ] } ] } ] }, { "id": "biology", "name": "Biology", "description": "Roles.", "rationale": "Amino acids build proteins.", "layers": [ { "id": "proteins", "name": "Proteins", "description": "Building blocks.", "findings": [ { "id": "proteins-finding", "name": "Proteins", "description": "Protein role.", "questions": [ { "text": "How does it contribute to protein structure?", "kind": "definition" }, { "text": "Which codons encode it?", "kind": "definition" } ] } ] }, { "id": "metabolism", "name": "Metabolism", "description": "Other roles.", "findings": [ { "id": "metabolism-finding", "name": "Metabolism", "description": "Metabolic roles.", "questions": [ { "text": "What other roles does it have, such as neurotransmitter precursor?", "kind": "definition" }, { "text": "Which pathways?", "kind": "provenance" } ] } ] } ] }, { "id": "nutrition", "name": "Nutrition", "description": "Diet.", "rationale": "Diet supplies essential amino acids.", "layers": [ { "id": "sources", "name": "Sources", "description": "Foods.", "findings": [ { "id": "sources-finding", "name": "Sources", "description": "Dietary sources.", "questions": [ { "text": "Which foods provide it?", "kind": "definition" }, { "text": "What does dietary guidance say about protein?", "kind": "provenance" } ] } ] }, { "id": "disorders", "name": "Disorders", "description": "Inborn errors.", "findings": [ { "id": "disorders-finding", "name": "Disorders", "description": "Metabolic disorders.", "questions": [ { "text": "Is a metabolic disorder such as PKU relevant?", "kind": "boundary" }, { "text": "Who manages the diet?", "kind": "action" } ] } ] } ] }, { "id": "supplements", "name": "Supplements", "description": "Claims.", "rationale": "Claims need evidence.", "layers": [ { "id": "claims", "name": "Claims", "description": "Evidence.", "findings": [ { "id": "claims-finding", "name": "Claims", "description": "Supplement claims.", "questions": [ { "text": "Is a claimed benefit authorised or supported by evidence?", "kind": "provenance" }, { "text": "Which authority assessed it?", "kind": "provenance" } ] } ] }, { "id": "safety", "name": "Safety", "description": "Intake.", "findings": [ { "id": "safety-finding", "name": "Safety", "description": "Supplement safety.", "questions": [ { "text": "Are there safe upper intake levels?", "kind": "measurement" }, { "text": "Should a doctor or dietitian be consulted?", "kind": "boundary" } ] } ] } ] } ] }, "openQuestions": [ "Should each amino acid be a separate entry?", "How should databases be linked?", "How should supplement claims be assessed?" ], "statistics": { "bundles": 4, "layers": 8, "findings": 8, "questions": 16 } }