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Research draft

microtubule

vr.tr.microtubule · PHY.LIV

Let an agent explain microtubules, relay structure, dynamics, functions and medical relevance from cell biology sources, describe the named microtubule populations, and distinguish microtubules from actin filaments, intermediate filaments, centrioles as structures built from microtubules and bacterial tubulin homologues.

Thing Registry Physical world and living systems

Research draft, second pass

A second pass drafted this model: the structure a model of this thing needs, and what is known about it in the world. The line under this one says how the second half was obtained - researched against sources, or recalled without web access, in which case nothing here was read anywhere and every claim is a lead to verify. Unreviewed either way.

written by Claude from model knowledge without web access - no source was read, every claim is a lead to verify

Researched by: Claude

Purpose and description

Let an agent explain microtubules, relay structure, dynamics, functions and medical relevance from cell biology sources, describe the named microtubule populations, and distinguish microtubules from actin filaments, intermediate filaments, centrioles as structures built from microtubules and bacterial tubulin homologues.

A hollow cylindrical polymer of alpha- and beta-tubulin, about 25 nanometres in diameter, forming part of the cytoskeleton of eukaryotic cells, with dynamic instability of growth and shrinkage described by Mitchison and Kirschner in 1984, organising the mitotic spindle, cilia and flagella and intracellular transport by motor proteins, found in populations the registry aliases name such as spindle, cytoplasmic, nuclear and dendritic microtubules, and specialised arrays such as subpellicular microtubules in trypanosomes and apicomplexans and intraconoid microtubules in the conoid of apicomplexan parasites; drugs such as taxanes and vinca alkaloids target microtubules in cancer therapy.

What it is for: Cell shape, division, transport and motility.

It can be explain structure and dynamics; relay functions; describe named populations; relay drug targeting.

Distinguishing features

Hollow tube

Polarity

Dynamic instability

Drug target

What it looks like

Not visible to the eye; seen in fluorescence and electron microscopy as fine tubes.

Physical character

outer diameter: about 25 nm

protofilaments: typically 13 count

dynamic instability described: 1984 year - Mitchison and Kirschner

How it is recognised

Tubulin polymer tube of the cytoskeleton

Spindle, cytoplasmic, nuclear, intraconoid, dendritic and subpellicular microtubules

Actin filaments are thinner; intermediate filaments are rope-like; centrioles are built from microtubules; FtsZ is a bacterial homologue

Related models

is a kind of - component

cytoskeleton

is made of -

tubulin

forms -

mitotic spindle

is targeted by -

paclitaxel

In practice

Families and kinds

spindle microtubules

cytoplasmic microtubules

axonemal microtubules in cilia

neuronal and dendritic microtubules

parasite subpellicular and conoid microtubules

Standards and regulation

Gene Ontology cellular component terms

Failure modes and hazards

Oversimplifying dynamics

Confusing cytoskeletal filament types

Overstating speculative roles such as in consciousness

Also called

spindle microtubulecytoplasmic microtubulenuclear microtubuleintraconoid microtubuledendritic microtubulesubpellicular microtubulepost-anaphase array microtubuleneurotubuleneuropil thread

Where this came from

wikidata · CC0 1.0

Also registered as vr.tr.microtubule

Drafted structure

Bundle to layer to finding to question, as the second pass will find it: 4 bundles · 8 layers · 8 findings · 16 questions.

Understand What a microtubule is.

Science.

Definition

Definition.

Definition

Definition.

  1. What is a microtubule, and how does it differ from actin and intermediate filaments, centrioles and FtsZ? definition
  2. Is the question about cell biology, cancer drugs, neurons or parasites? boundary

Populations

Named populations.

Populations

Populations.

  1. What are spindle, cytoplasmic, nuclear, dendritic, subpellicular and intraconoid microtubules? definition
  2. Which entry fits the specific population? action
Biology Structure and dynamics.

Science.

Structure

Structure.

Structure

Structure.

  1. How do tubulin dimers assemble into protofilaments and tubes? provenance
  2. Which references are standard? provenance

Dynamics

Dynamic instability.

Dynamics

Dynamics.

  1. What is dynamic instability, and how is it regulated? provenance
  2. Which sources are cited? provenance
Function Functions.

Application.

Division

Cell division.

Division

Division.

  1. How do spindle microtubules separate chromosomes? provenance
  2. Which entry fits mitosis? action

Transport

Motor transport.

Transport

Transport.

  1. How do kinesin and dynein move cargo along microtubules? provenance
  2. Which entry fits kinesin? action
Context Medicine.

Context.

Drugs

Cancer drugs.

Drugs

Drugs.

  1. How do taxanes and vinca alkaloids affect microtubules? provenance
  2. Which entry fits vinca alkaloid? action

Disease

Disease links.

Disease

Disease.

  1. How are microtubule-associated proteins such as tau linked to neurodegeneration? provenance
  2. Which entry fits tau protein? action

What the second pass must settle

  • Should parasite microtubule arrays be separate entries?
  • How should Gene Ontology be linked?
  • How should speculative hypotheses be flagged?